PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g58015.1.p
Common NameBRADI_3g58015
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 249aa    MW: 26487.6 Da    PI: 6.2755
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g58015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.2e-18117167155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                       ++++GVr+++ +g+W+AeIrdp     +   r +lg+f+ta +Aa+a++ a+ +++g
  Bradi3g58015.1.p 117 KKFRGVRQRP-WGKWAAEIRDP-----HraVRKWLGTFDTAADAARAYDVAAFEFRG 167
                       59********.**********7.....338************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.16E-31117177No hitNo description
PROSITE profilePS5103224.605118175IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-21118176IPR016177DNA-binding domain
SMARTSM003803.1E-35118181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-30118176IPR001471AP2/ERF domain
PfamPF008471.6E-11118167IPR001471AP2/ERF domain
PRINTSPR003675.4E-13119130IPR001471AP2/ERF domain
PRINTSPR003675.4E-13157177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MVPRLDCGAG DGGFFFQLPN TEQENSLFLR ALISVVSVPA LHLEEQQPSP VAAAAACARC  60
GVDGCPGTGS SCEQLVAMTG SSSEGEAEAE EHCSPAAASF GARKTTMKKT GQSGGSKKFR  120
GVRQRPWGKW AAEIRDPHRA VRKWLGTFDT AADAARAYDV AAFEFRGRRA KLNFPADAAV  180
SSSSSAAAQP RSFRENYCGS NNASSAVPVP EPEQQGLVMR PAVAREQEIW DGLQEIMMLD  240
DGSFWSKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20117175463ATERF1
3gcc_A2e-20117175463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g58015.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3748261e-72AK374826.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3077G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570570.11e-154ethylene-responsive transcription factor ERF109
TrEMBLA0A0Q3INJ40.0A0A0Q3INJ4_BRADI; Uncharacterized protein
STRINGBRADI3G58015.11e-153(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.16e-21related to AP2 6