PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g57862.1.p | ||||||||
Common Name | BRADI_3g57862, LOC100830738 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 24612.3 Da PI: 5.0078 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.5e-18 | 30 | 79 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr ++ +g+Wv+eIr p ++++r++lg++ tae Aa+a++aa ++l+g Bradi3g57862.1.p 30 QYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLRG 79 69****998.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.944 | 30 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-18 | 30 | 90 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-28 | 30 | 89 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-32 | 30 | 95 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-11 | 31 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-9 | 31 | 42 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.03E-15 | 31 | 90 | No hit | No description |
PRINTS | PR00367 | 5.5E-9 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MVKGAQHDAL GNGNASSAAA RQGRQHQQQQ YKGVRMRSWG SWVSEIRAPN QKTRIWLGSY 60 STAEAAARAY DAALLCLRGS AAAADLNFPV RLPFHLPAAA MSPKSIQRLA AAAASSNANA 120 ASFIPFLHDA GHGAMAASSA SMCSSPETAN NNGNDNDNAE HDDEMTMMMR GGDMDYGALA 180 DIDGFFPSPK CAGYGMMEMD PCSTFFAPAP AAAAECWEEE GEISLWSFSS FN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-12 | 30 | 89 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g57862.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK377012 | 1e-97 | AK377012.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3145K04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024316187.1 | 1e-171 | ethylene-responsive transcription factor ERF019 | ||||
TrEMBL | A0A0Q3I7I0 | 1e-169 | A0A0Q3I7I0_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G57867.2 | 1e-102 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3197 | 34 | 69 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 1e-24 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g57862.1.p |
Entrez Gene | 100830738 |