PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g57710.1.p
Common NameBRADI_3g57710, LOC100825421
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 560aa    MW: 58632.1 Da    PI: 4.5713
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g57710.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.1e-31330389159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r++ed +++++tYeg+Hnh+
  Bradi3g57710.1.p 330 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCQEDMSILITTYEGTHNHP 389
                       58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-32315391IPR003657WRKY domain
SuperFamilySSF1182901.7E-27323391IPR003657WRKY domain
PROSITE profilePS5081129.126325391IPR003657WRKY domain
SMARTSM007744.5E-38330390IPR003657WRKY domain
PfamPF031062.5E-27331389IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MSSSSKRKRA AIDLERSGDD DDGDRRAEDE GGCGSAAEKE GEVKQGEEEH AETKKVVVGV  60
VVDRAGDGSK EEIKFSTQLQ QGEVPMEEDR KKSPSPDADE EESDGVGAVA EDKHMVEAAR  120
PGDGDGTGEE EDSRIISMAQ AGELSTMQEE MEKMKEENKM LRRVVDRTVR DYYELQTKLA  180
AYQKLPADDA PKETDVFLSL GATAGLGPEQ QQAEARRPSA GSDDTAADDG CRPGQDNLGL  240
SLSLGASSSY EDQEKTGLEA AAPGMAMSID DVDDDGGGNK AGYALLESSK MAPPDQVAGG  300
QQQQQGQGVN AANNRKARVS VRVRCQGSTM NDGCQWRKYG QKVAKGNPCP RAYYRCTVAP  360
GCPVRKQVQR CQEDMSILIT TYEGTHNHPL PIGATAMAAS STASSNDTFM LLSSNNSSSS  420
SVSGAGPPPS SYLSPFLLNS GSQYPGAMAG GAQHLNLFGN PSSAQHLKYP AWPPSYPSSH  480
AGAAGGKRPF WSAGAGDDRP TTAADNAGTA AADSNRFSAA IAAAIKNYAG KDGGGQVMGG  540
KEGESSSSKW GVVESLPPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22317393176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g57710.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3632471e-105AK363247.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013L09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573034.10.0probable WRKY transcription factor 9
TrEMBLI1IER70.0I1IER7_BRADI; Uncharacterized protein
STRINGBRADI3G57710.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.12e-49WRKY DNA-binding protein 9