PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g57300.1.p
Common NameBRADI_3g57300, LOC100846611
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 628aa    MW: 70241.7 Da    PI: 5.2602
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g57300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-08513560347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       +WT  E ++lvd+v+++G g W+ I r        Rt  ++k++w+++
  Bradi3g57300.1.p 513 AWTLSEVLKLVDGVARFGVGKWSEIRRLAFasySYRTSVDLKDKWRNL 560
                       7***************************999**99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.907506565IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.2E-12507564IPR009057Homeodomain-like
SMARTSM007172.0E-8510563IPR001005SANT/Myb domain
SuperFamilySSF466891.09E-14512565IPR009057Homeodomain-like
CDDcd116603.45E-18512562No hitNo description
PfamPF002491.1E-5513560IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0031627Biological Processtelomeric loop formation
GO:0046686Biological Processresponse to cadmium ion
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MEVGAPQDAR ENKNEENEFE ENGSSDPVVY QLVRVEGDGT LVPATEDEVL QFEHFVDEKV  60
DLPSIEDVGR VEDFFANNCM FLKPDLEEGP CKLETTGKLQ TQKLDADLEE DRLKPLDDSL  120
DIPSKCTVVH DKQPEKLNTE QGYHNTVHLD NASTETTKST VLNDSCSVEK EKADACSRHV  180
NDSSTEPSVS GITSSVPDFS ILRGEVFLDT LTIRELQEAF RATFGRQTTV KDKLWLKRRI  240
TMGLTHSCDV PSSGCVIKDY IVVGKDAKEE LPTIEGILKV EVEATSLARD QVLDHANERD  300
TPSSSYYQSE DQQRSSKRLK GISTDNDESL GTLQDEQGTA KRLRKPTKRY IEELSDIETF  360
DSTGKLSSPG KRPAHDEVLL RPRATFQEVD SLTITYPTRK DTFGGFSVHV PYVSRMRRGR  420
PRRNFSSFLD DKPSVECAEV QMAVEMTVEK DGEQGNHVNQ AMEVPLMNNA EKNGGHVETA  480
DNKEVRTVEA NILCRADAKS KTKRSLKRKH HRAWTLSEVL KLVDGVARFG VGKWSEIRRL  540
AFASYSYRTS VDLKDKWRNL IRASQTQLYL EKDGSCLRKS NPSTIPIPPS ILLRVKELAE  600
MQPQVGDLAA PMQLNSRAAQ GKGSGFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g57300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570524.10.0uncharacterized protein LOC100846611 isoform X2
TrEMBLI1IEM20.0I1IEM2_BRADI; Uncharacterized protein
STRINGBRADI3G57300.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.15e-84TRF-like 6