PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g57017.5.p | ||||||||
Common Name | LOC100840222 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 243aa MW: 27575.5 Da PI: 8.815 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.9 | 2.6e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++nrqvtfskRr g+lKKA+ELS+LCdaev +++fsstg+ly++++ Bradi3g57017.5.p 10 RIDNSTNRQVTFSKRRSGLLKKAKELSILCDAEVGLVVFSSTGRLYDFCN 59 8***********************************************85 PP | |||||||
2 | K-box | 77.1 | 4.6e-26 | 76 | 170 | 4 | 98 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 ++ + +++++ + +q+e+a L+++++nLq+++++l+Ge+L+ L + +Lq Le++Le sl++i+++K++ll+ +ieel +k +++en++L + Bradi3g57017.5.p 76 QQPVVNATSEIKLWQREAASLRQQLHNLQESHKQLMGEELSGLGVTDLQGLENRLEMSLRSIKTRKDHLLRGEIEELHRKGSLIHQENMELYR 168 44455788999********************************************************************************98 PP K-box 97 kl 98 ++ Bradi3g57017.5.p 169 RV 170 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.595 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.2E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.02E-32 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.51E-43 | 2 | 77 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.4E-25 | 84 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.779 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTNRQVT FSKRRSGLLK KAKELSILCD AEVGLVVFSS TGRLYDFCNT 60 NMKAVIDRYT RAKEEQQPVV NATSEIKLWQ REAASLRQQL HNLQESHKQL MGEELSGLGV 120 TDLQGLENRL EMSLRSIKTR KDHLLRGEIE ELHRKGSLIH QENMELYRRV NVMTQQKVEL 180 CRQLQSCEAR GAMDATKSCT TPYNFCIVQD ANTPADLELS RSQEKEGEHI KTGAPELGFQ 240 LS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-21 | 1 | 82 | 1 | 82 | MEF2C |
5f28_B | 2e-21 | 1 | 82 | 1 | 82 | MEF2C |
5f28_C | 2e-21 | 1 | 82 | 1 | 82 | MEF2C |
5f28_D | 2e-21 | 1 | 82 | 1 | 82 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g57017.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF469324 | 0.0 | KF469324.1 Brachypodium distachyon MADS-box transcription factor 29 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014755382.1 | 1e-180 | MADS-box transcription factor 57-like isoform X4 | ||||
Swissprot | Q6Z6W2 | 1e-132 | MAD57_ORYSJ; MADS-box transcription factor 57 | ||||
TrEMBL | I1IEJ2 | 1e-179 | I1IEJ2_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G57017.3 | 1e-180 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 1e-86 | AGAMOUS-like 16 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g57017.5.p |
Entrez Gene | 100840222 |
Publications ? help Back to Top | |||
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