PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g57000.3.p | ||||||||
Common Name | BRADI_3g57000, LOC100842660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | CO-like | ||||||||
Protein Properties | Length: 449aa MW: 48210 Da PI: 8.002 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 27.5 | 6.6e-09 | 23 | 64 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +r C+ + + +++++C ++ +lC++C ++ H+ H+ Bradi3g57000.3.p 23 ARACDGCMRRRARWYCAADDAFLCQSCDTSVHSAnplarrHE 64 578*****************************6567777776 PP | |||||||
2 | CCT | 67.2 | 4.6e-23 | 395 | 438 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++ Bradi3g57000.3.p 395 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRP 438 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.865 | 21 | 68 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.5E-11 | 21 | 68 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.70E-11 | 24 | 68 | No hit | No description |
Pfam | PF00643 | 1.4E-7 | 24 | 65 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.993 | 395 | 437 | IPR010402 | CCT domain |
Pfam | PF06203 | 5.2E-18 | 395 | 437 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MSSSERKAGG GGGASAAVGG KAARACDGCM RRRARWYCAA DDAFLCQSCD TSVHSANPLA 60 RRHERLRLRG AMPMPMPVEG GVASETTMAT KTATKAKRLQ GGVAWAKRKA RTRRPPVKSV 120 GQLLLSRRLV VRVPDDHQAG AGGESSDEQR AAAAEDEEEQ QLLYRVPVFD PALGEFCSPP 180 PVEDYYAIGN DNDNAFVVGE DTNKQLVGPA SSSSPVQELP DCFASFGPTD AELREFAADM 240 EALLGGQDAL GGNEQLMAED SFYMEALGLV SPLSGDHKGV DAGRPVKVET DGGARRSSPP 300 TLVDDDDGSF EHKAATASYG EAADAGFLKR SLDLRLNYEA VIEGWGSSPW TDGRRPHGGQ 360 LDDLLLHDHY YSGMWTAAAG GGRAARPAAD DGGWREARVS RYREKRRTRL FAKKIRYEVR 420 KLNAEKRPRM KGRFVKRPAG AAPCAVVA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 405 | 421 | RRTRLFAKKIRYEVRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g57000.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 1e-49 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024316643.1 | 0.0 | zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | I1IEI8 | 0.0 | I1IEI8_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G57000.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 5e-55 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g57000.3.p |
Entrez Gene | 100842660 |