PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g56801.1.p | ||||||||
Common Name | BRADI_3g56801, LOC104583860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 224aa MW: 23819.3 Da PI: 4.3421 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.6 | 2.3e-16 | 17 | 66 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr++k +g+Wv+eIr p++ r r++lg+++ +e+Aa+a +aa +++g Bradi3g56801.1.p 17 KYKGVRRRK-WGKWVSEIRLPNS---RERVWLGSYDAPEQAARAFDAAFVCIRG 66 8*****998.**********933...5*********************988887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.8E-27 | 16 | 78 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.799 | 17 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.08E-21 | 17 | 70 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-18 | 17 | 77 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.5E-28 | 17 | 83 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-9 | 17 | 60 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-9 | 18 | 29 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-9 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MSSTSAAEVV AEGGGRKYKG VRRRKWGKWV SEIRLPNSRE RVWLGSYDAP EQAARAFDAA 60 FVCIRGAHAA GADLNFPDFP PPVPPRHFAA PAVVDPQEVQ AAALSHANRA SAAALFMDSS 120 PAATETPPPA AAAMDEDDVP GGCQGVGPPE DGSMDWRPAM PPLFSPTGCW PGGGSNAYDF 180 LLQVPPPLFG DEDVMDQEEE ESGHGADASL WSFDPRSDSY FRY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 18 | 24 | KGVRRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g56801.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010236021.1 | 1e-160 | ethylene-responsive transcription factor ERF038 | ||||
TrEMBL | A0A0Q3I6Y1 | 1e-159 | A0A0Q3I6Y1_BRADI; Uncharacterized protein | ||||
STRING | Traes_6DL_FA861D610.2 | 4e-73 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 1e-16 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g56801.1.p |
Entrez Gene | 104583860 |