PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g56180.3.p
Common NameBRADI_3g56180
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 292aa    MW: 32304.3 Da    PI: 4.2492
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g56180.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.48e-213184356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      k++++t+eq++ Le+ Fe+++++  e+++eLA+klgL+ rqV vWFqNrRa++k
  Bradi3g56180.3.p 31 KKRRLTPEQVHLLEKSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWK 84
                      5678*************************************************9 PP
2HD-ZIP_I/II131.23.9e-4230121192
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       ekkrrl+ eqv+lLE+sFeee+kLeperK+elar+LglqprqvavWFqnrRAR+ktk lE+d+++Lk+++dal++++++L +++++Lr+++ 
  Bradi3g56180.3.p  30 EKKRRLTPEQVHLLEKSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKTLERDFDRLKASFDALRADHDALLQDNHRLRSQVV 121
                       69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.8E-202386IPR009057Homeodomain-like
PROSITE profilePS5007118.2852686IPR001356Homeobox domain
SMARTSM003891.8E-202990IPR001356Homeobox domain
CDDcd000861.83E-203186No hitNo description
PfamPF000464.4E-183184IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.6E-223292IPR009057Homeodomain-like
PRINTSPR000311.7E-65766IPR000047Helix-turn-helix motif
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PRINTSPR000311.7E-66682IPR000047Helix-turn-helix motif
PfamPF021831.8E-1686128IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEEGRGVKRP FFTSPDDLLE EEYYDEQLPE KKRRLTPEQV HLLEKSFEEE NKLEPERKTE  60
LARKLGLQPR QVAVWFQNRR ARWKTKTLER DFDRLKASFD ALRADHDALL QDNHRLRSQV  120
VTLTEKMQEK EAPGPAGGAA MDASEQLQPP EDQAKASVDA EEQMAAAEAF DEALLLQQVK  180
AEDRLSTGSG AGSAVLDADA LLAVVDSSVE SYSYFPPGGA ADEYHHDCVM GGAGGIQSEE  240
DDGAGSDEGC SYLPDDDAGV LFGAGHGHHH AEDEEEDGGQ ISWWMWNWST S*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g56180.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3640061e-174AK364006.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020M04.
GenBankAK3642581e-174AK364258.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023C19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572981.10.0homeobox-leucine zipper protein HOX16
SwissprotA2X9801e-107HOX16_ORYSI; Homeobox-leucine zipper protein HOX16
SwissprotQ6YWR41e-107HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBLA0A0Q3IMM60.0A0A0Q3IMM6_BRADI; Uncharacterized protein
TrEMBLI1IE890.0I1IE89_BRADI; Uncharacterized protein
STRINGBRADI3G56180.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-51homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]