PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g56180.1.p
Common NameBRADI_3g56180, LOC100831051
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 341aa    MW: 37029.7 Da    PI: 4.3614
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g56180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox651e-2080133356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k++++t+eq++ Le+ Fe+++++  e+++eLA+klgL+ rqV vWFqNrRa++k
  Bradi3g56180.1.p  80 KKRRLTPEQVHLLEKSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWK 133
                       5678*************************************************9 PP
2HD-ZIP_I/II130.85.3e-4279170192
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       ekkrrl+ eqv+lLE+sFeee+kLeperK+elar+LglqprqvavWFqnrRAR+ktk lE+d+++Lk+++dal++++++L +++++Lr+++ 
  Bradi3g56180.1.p  79 EKKRRLTPEQVHLLEKSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKTLERDFDRLKASFDALRADHDALLQDNHRLRSQVV 170
                       69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.18E-2072135IPR009057Homeodomain-like
PROSITE profilePS5007118.28575135IPR001356Homeobox domain
SMARTSM003891.8E-2078139IPR001356Homeobox domain
PfamPF000465.4E-1880133IPR001356Homeobox domain
CDDcd000861.29E-2080135No hitNo description
Gene3DG3DSA:1.10.10.607.3E-2281141IPR009057Homeodomain-like
PRINTSPR000312.2E-6106115IPR000047Helix-turn-helix motif
PROSITE patternPS000270110133IPR017970Homeobox, conserved site
PRINTSPR000312.2E-6115131IPR000047Helix-turn-helix motif
PfamPF021832.3E-16135177IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEPGRLIFNT SGSGAGQMLF LDCGAGGIGA GGAAAAAMFH HRGGRPVLGM EEGRGVKRPF  60
FTSPDDLLEE EYYDEQLPEK KRRLTPEQVH LLEKSFEEEN KLEPERKTEL ARKLGLQPRQ  120
VAVWFQNRRA RWKTKTLERD FDRLKASFDA LRADHDALLQ DNHRLRSQVV TLTEKMQEKE  180
APGPAGGAAM DASEQLQPPE DQAKASVDAE EQMAAAEAFD EALLLQQVKA EDRLSTGSGA  240
GSAVLDADAL LAVVDSSVES YSYFPPGGAA DEYHHDCVMG GAGGIQSEED DGAGSDEGCS  300
YLPDDDAGVL FGAGHGHHHA EDEEEDGGQI SWWMWNWSTS *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g56180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1195921e-175AK119592.1 Oryza sativa Japonica Group cDNA clone:002-117-D05, full insert sequence.
GenBankAK3640061e-175AK364006.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020M04.
GenBankAK3642581e-175AK364258.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023C19.
GenBankAY5590451e-175AY559045.1 Oryza sativa homeodomain leucine zipper protein 16 (hox16) mRNA, complete cds.
GenBankCU4059601e-175CU405960.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572981.10.0homeobox-leucine zipper protein HOX16
SwissprotA2X9801e-127HOX16_ORYSI; Homeobox-leucine zipper protein HOX16
SwissprotQ6YWR41e-127HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBLI1IE890.0I1IE89_BRADI; Uncharacterized protein
STRINGBRADI3G56180.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.16e-54homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]