PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g55760.1.p
Common NameBRADI_3g55760, LOC104584310
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 183aa    MW: 19589.2 Da    PI: 4.5359
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g55760.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.6e-054264123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ykC+ C + F++   L  H+++H
  Bradi3g55760.1.p 42 YKCGFCRRGFPTAQALGGHMNVH 64
                      9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.34E-63968No hitNo description
Gene3DG3DSA:3.30.160.605.8E-44066IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.914269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MEELGQEISK GGRRPPTGED EEDKQRLDDE DDDDDEGRRQ PYKCGFCRRG FPTAQALGGH  60
MNVHRRKEYR PGPRPGSGGV ICSYGEPPPA VATTLAAGQQ PACGPAASGG SSMLFHGVER  120
APRALRLFGR EIVDSGASGE ARDNRQGQYY DGRNGDDDDH GGQGDEEGEL DLELRLGAAG  180
QY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g55760.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236875.11e-128transcriptional regulator SUPERMAN
TrEMBLI1IE231e-126I1IE23_BRADI; Uncharacterized protein
STRINGBRADI3G55760.11e-127(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145472224
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.13e-11C2H2 family protein