PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g55430.2.p
Common NameBRADI_3g55430, LOC100845207
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 652aa    MW: 71060.4 Da    PI: 8.481
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g55430.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.1e-09560609147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       r +++  E ellv+av+qlG g+Wk +  +     + Rt  +ck++w ++
  Bradi3g55430.2.p 560 RRPFSVAEVELLVEAVEQLGFGRWKDVKFHAFgsnNERTYVDCKDKWKNL 609
                       678999*********************988767**99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542365.06E-8383463IPR029071Ubiquitin-related domain
PROSITE profilePS500538.916388458IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.908.7E-4392459No hitNo description
PROSITE profilePS5129417.482555614IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-11556611IPR009057Homeodomain-like
SuperFamilySSF466895.08E-14557612IPR009057Homeodomain-like
SMARTSM007172.7E-8559612IPR001005SANT/Myb domain
PfamPF002491.1E-6560609IPR001005SANT/Myb domain
CDDcd116601.80E-15561611No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MVFRKMPGRG SCGRGRGRGR GSGQVRATPC ATTLAPVKRS ARLKKKQMYA LDLLATVAET  60
LSSDQEGSSS GTDTDGAVAS YNSNGTSVKS EQFDEVPPFN STALGQNCCE EYTVSCAGTC  120
ASLRQTNICK MESLLTQNVA DTVSESLTEK SDVFVKGSPV SCTKPRRLDC GLGTIPEYGT  180
IGVCPRCPTR SVEVKQEDGD RPEVIKSQVD GSAATLHSSV DTMDLDIKPP FVISSESTSG  240
VHLDVHEKGH NSSPFCFSKV QHAAGRNDDE NLPRCVHPNT SGIKGGYLPH YLGDCRTRRL  300
FATRIRKAAR NKICGKMSNK GSKLNFRGKK ISTARRRVQM HRTMLKTKKV AEFYSAQPSD  360
EETLTETSGT SFSMGGQDPP CASEGCHVKF VIKSFNIPEL LIEVPENATV GSLKRIVRDA  420
VTKTIEGSLR VSVLLQGQII QDDNKTLHQA GICHGAKLDS MGFTLECEAE RGSHPSAIPP  480
EEMEPVGVSD VKPLSTVKWE EPSPSCSLSN PGDYPFEGTV QDTSESSQAI GTAPTLNVTE  540
LAIVPFSKSK QRDFGQRRKR RPFSVAEVEL LVEAVEQLGF GRWKDVKFHA FGSNNERTYV  600
DCKDKWKNLV HTASIPLQLR RGQAIPPQEL LDRVLAAQTY WSVQQPKPEP R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2roh_A9e-445376438113Telomere binding protein-1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1818RGSCGRGRGRG
Functional Description ? help Back to Top
Source Description
UniProtBinds the telomeric double-stranded 5'TTTAGGG-3' repeat and regulates telomere length and structure. {ECO:0000269|PubMed:10811811, ECO:0000269|PubMed:17586654}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g55430.2.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3733775e-96AK373377.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3028O09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757203.10.0telomere-binding protein 1 isoform X1
SwissprotQ9LL450.0TBP1_ORYSJ; Telomere-binding protein 1
TrEMBLA0A0Q3FQE50.0A0A0Q3FQE5_BRADI; Uncharacterized protein
STRINGBRADI3G55430.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108241215
Representative plantOGRP13911225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.13e-55TRF-like 2
Publications ? help Back to Top
  1. Yu EY, et al.
    Sequence-specific DNA recognition by the Myb-like domain of plant telomeric protein RTBP1.
    J. Biol. Chem., 2000. 275(31): p. 24208-14
    [PMID:10811811]
  2. Hong JP, et al.
    Suppression of RICE TELOMERE BINDING PROTEIN 1 results in severe and gradual developmental defects accompanied by genome instability in rice.
    Plant Cell, 2007. 19(6): p. 1770-81
    [PMID:17586654]
  3. Ko S, et al.
    Solution structure of the DNA binding domain of rice telomere binding protein RTBP1.
    Biochemistry, 2009. 48(5): p. 827-38
    [PMID:19152316]
  4. Mukherjee K,Pandey DM,Vidyarthi AS
    In silico characterization and analysis of RTBP1 and NgTRF1 protein through MD simulation and molecular docking - A comparative study.
    Interdiscip Sci, 2015.
    [PMID:25663113]
  5. Mukherjee K,Pandey DM,Vidyarthi AS
    In Silico Characterization and Analysis of RTBP1 and NgTRF1 Protein Through MD Simulation and Molecular Docking: A Comparative Study.
    Interdiscip Sci, 2015. 7(3): p. 275-86
    [PMID:26289405]