PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g54120.1.p
Common NameBRADI_3g54120, LOC100829000
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARR-B
Protein Properties Length: 672aa    MW: 73152.1 Da    PI: 6.5646
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g54120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.65.6e-28212265155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       +pr++W+ eLH++Fv av++L G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  Bradi3g54120.1.p 212 RPRVVWSVELHRKFVAAVNHL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 265
                       59*******************.********************************8 PP
2Response_reg77.64.4e-26231311109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl vdD+p+ +++l+++l++ +y +v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++++ge +++ + + 
  Bradi3g54120.1.p  23 VLAVDDDPVCLKVLETLLRRCQY-HVTATNQAVIALRMLRENRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSGNGETKTVMKGIT 113
                       799********************.***************99999********************87754.558******************** PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                        Ga d+l Kp+ +eel++
  Bradi3g54120.1.p 114 HGACDYLLKPVRIEELRN 131
                       ****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.9E-1842671IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23003.3E-4120144No hitNo description
SuperFamilySSF521723.56E-3520145IPR011006CheY-like superfamily
SMARTSM004489.7E-3121133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.06322137IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-2323132IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.46E-2624136No hitNo description
PROSITE profilePS5129411.892209268IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-29210270IPR009057Homeodomain-like
SuperFamilySSF466893.94E-19210269IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-25213265IPR006447Myb domain, plants
PfamPF002492.9E-6214264IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MRPEEMRGVA ARGRDQFPVG MRVLAVDDDP VCLKVLETLL RRCQYHVTAT NQAVIALRML  60
RENRDMFDLV ISDVHMPDMD GFKLLELVGL EMDLPVIMLS GNGETKTVMK GITHGACDYL  120
LKPVRIEELR NIWQHVVRRK FSTPDYVNLD TYEECNKPPN ADSGYVYSQV TCGSPDQNGR  180
PNKKRKDYHS EEEGEDEESN GQDDDDPSAP KRPRVVWSVE LHRKFVAAVN HLGIDKAVPK  240
RILELMNVEK LTRENVASHL QKYRLYLRRL SAVASQQAGI VASLGGKDHF LRMGAFEGLQ  300
GYQAFTSPTA LPSFSAHGLL NSPRNNQTAL VIQGLASSRS IQTASGSSTT NHSIVDANKY  360
HLSLRGNQQG NLAQGLVTSL GPAQLQQKFI NEETGDLSTI LSVNGQANGT PGIFQSVTSS  420
PLLPQDLVEF TQGKVDIQPS IRAPSVRLEH LEGAVGASSG LLESRVSQQC ATPLSGYSAS  480
RLLTNSSFNN NGATRLCGTT SSAVARDTNV GASSFGGPSP SDTNQKYLNF GSGNSFRQKI  540
NERSGDSLLD PKLVWSSSQL TSNFGLGAYH SMSQRTNNDS INSSHCARMT GQTSASAPVV  600
VPQTKLDALF SEDLQMPRNA SDLSIPRLQS ELSSSTCSFD GLLNSIIKVE KDDISFGDDL  660
GCDFYSLSAC I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-25208271164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g54120.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570300.10.0two-component response regulator ORR23
RefseqXP_014756381.10.0two-component response regulator ORR23
SwissprotB8AEH10.0ORR23_ORYSI; Two-component response regulator ORR23
TrEMBLI1IDG80.0I1IDG8_BRADI; Two-component response regulator
STRINGBRADI3G54120.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-115response regulator 12