PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g52807.2.p
Common NameBRADI_3g52807, LOC100823169
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 98aa    MW: 10709.4 Da    PI: 4.6928
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g52807.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.8e-07349245
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      ++WT+    l+  a + + ++   +W  +ar +g g++++++k ++ 
  Bradi3g52807.2.p  3 QSWTKRQNALFESALAVFEKDtadRWQNVARAVGDGKSAEDVKRHYE 49
                      78*******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.9E-5154IPR001005SANT/Myb domain
PROSITE profilePS5129310.944156IPR017884SANT domain
SuperFamilySSF466897.77E-10357IPR009057Homeodomain-like
CDDcd001670.00164451No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MSQSWTKRQN ALFESALAVF EKDTADRWQN VARAVGDGKS AEDVKRHYEE LEKDVEDMES  60
AGGRQGSDNS VSGASSSNSN SWGSANEDRR GRNLNLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-16397993RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g52807.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570194.17e-64protein RADIALIS-like 4
SwissprotQ6NNN06e-21RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLI1ID142e-62I1ID14_BRADI; Uncharacterized protein
STRINGBRADI3G52807.13e-63(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.29e-20RAD-like 6