PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g52500.2.p | ||||||||
Common Name | BRADI_3g52500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | G2-like | ||||||||
Protein Properties | Length: 295aa MW: 32605 Da PI: 8.9469 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.7 | 1.3e-33 | 25 | 79 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LHerFveav++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYR+ Bradi3g52500.2.p 25 KPRLRWTPDLHERFVEAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRM 79 79****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.716 | 22 | 82 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-32 | 22 | 80 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.56E-16 | 25 | 81 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-24 | 25 | 80 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.3E-10 | 27 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 9.6E-25 | 124 | 168 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MMFEGMERAG YGVGAGGVVL SRDPKPRLRW TPDLHERFVE AVTKLGGPDK ATPKSVLRLM 60 GMKGLTLYHL KSHLQKYRMG KQSKKDTGFE TSRAAFATHG ISFSSATPPV VPSAGNNNMG 120 ETPLADALRY QIEVQRKLHE QLEVQKKLQM RIEAQGKYLQ TILEKAQKNL TYDSSAATNL 180 EATRSQLTDF NLALSGFMDD ATQVCEQNNG ELAKVISEDN LRAGNLGFQL YHGVQDAEDV 240 KCTADEDLLL LDLNIKGGYD HRLSSHGMRR GDADLTVGQH RRWTGVKIWY GHGG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-21 | 25 | 81 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-21 | 25 | 81 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-21 | 25 | 81 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-21 | 25 | 81 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00544 | DAP | Transfer from AT5G45580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g52500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003570169.2 | 0.0 | myb family transcription factor PHL11 | ||||
TrEMBL | A0A0Q3IKK1 | 0.0 | A0A0Q3IKK1_BRADI; Uncharacterized protein | ||||
STRING | MLOC_14844.3 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3940 | 34 | 70 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 9e-65 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g52500.2.p |