PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g52420.1.p
Common NameBRADI_3g52420
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 457aa    MW: 48321.6 Da    PI: 6.5075
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g52420.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30226284259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+
  Bradi3g52420.1.p 226 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNTLVITYTSEHNHP 284
                       699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.029220286IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.1E-31222286IPR003657WRKY domain
SuperFamilySSF1182902.88E-26223286IPR003657WRKY domain
SMARTSM007741.6E-37225285IPR003657WRKY domain
PfamPF031061.4E-25227284IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MCDYFLHRLE AGEQQPAGDL TDILRAGGAM PPVDAADLPS TATEWRLQSP TRLFAPTIQS  60
SVASDGAGPS AFDPFSGLQD PFSSCSTDYP SSSGSAAADF FDALAHDAMD AKVGVGNYVE  120
PAGATGGGAG GPLDMRNHHM MPIGPYATMG RGAVKLGGPM AAGQGLCPFD GVRGLQMSSS  180
PRSAGGGTKR RFGFNGHPKN QSRKVVCIPA PEAAVPGRTT GEVVPSDLWA WRKYGQKPIK  240
GSPYPRGYYR CSSSKGCPAR KQVERSRTDP NTLVITYTSE HNHPWPTQRN VLAGSTRSHY  300
AKNSSNTTAA ANSSKKNSSS RQQKPIIAKA EPRDHPQTAA SSTTTTSAPP AAVKEEAAGD  360
DTSAATLLDD HLLQQMFSQS CYRPMIPDQS QAGGGGHHDD FFADLTELDS DPVSLIFSAE  420
YMETCRQGGE PDKEKQAVDN KDLQLDPFVL DWAPAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-23199287280Disease resistance protein RRS1
5w3x_D3e-23199287280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g52420.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3689941e-125AK368994.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2083H02.
GenBankAK3722781e-125AK372278.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2148O17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316295.10.0probable WRKY transcription factor 35 isoform X1
SwissprotO647472e-62WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLI1ICW00.0I1ICW0_BRADI; Uncharacterized protein
STRINGBRADI3G52420.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-57WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]