PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g52320.2.p | ||||||||
Common Name | BRADI_3g52320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | G2-like | ||||||||
Protein Properties | Length: 352aa MW: 38171.2 Da PI: 10.3146 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102 | 3.7e-32 | 187 | 240 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Bradi3g52320.2.p 187 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 240 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.9E-29 | 184 | 240 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.15E-15 | 185 | 241 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-23 | 187 | 241 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.8E-7 | 188 | 239 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MELFPSHPDL QLQLQISPPH PPTKPMDLGF WKRALDTTAN TTPATISTSS PPMARTTTTT 60 YPSAPSAGVG GFHPAASTAQ LGGGLQFLQH TQPILHEAQA DLASTMRPIR GIPVYNTVSP 120 SSFPSFLQSQ LHHHNLAHVQ HQHCYVDAII GAGGGAAGPR SPGKVSGVGI GVGAAALRPA 180 KRGSRAPRMR WTTSLHARFV HAVELLGGHE RATPKSVLEL MDVKDLTLAH VKSHLQMYRT 240 IKTTDHKTAA TSYGQAKTII EIADDSYFDI TNTSGSESSV QQSNLDGNEH GSNMCALWSN 300 NSSRYCFLDR YNSRVHTGEK LLQRGLVPRQ IKRCQPRRHQ ILRGRATSEP R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-16 | 188 | 242 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-16 | 188 | 242 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-16 | 188 | 242 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-16 | 188 | 242 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g52320.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235845.1 | 0.0 | probable transcription factor KAN2 isoform X2 | ||||
TrEMBL | A0A0Q3IKH3 | 0.0 | A0A0Q3IKH3_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G52320.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 2e-39 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g52320.2.p |