PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g51840.3.p
Common NameBRADI_3g51840, LOC100826461
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 427aa    MW: 45397.4 Da    PI: 9.9245
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g51840.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.12.4e-3089191198
                       EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                       f+kv tpsdv+k++rlv+pk++ae++    +  +e++  l +ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  r  
  Bradi3g51840.3.p  89 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldSAANEKGLLLNFEDSAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSRGARaA 181
                       89***************************955556888*************************************************887667 PP

                       EE..EEEEE- CS
                B3  89 efelvvkvfr 98 
                         +l++ + r
  Bradi3g51840.3.p 182 ADRLFIDWKR 191
                       7777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-4179194IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.03E-2886187IPR015300DNA-binding pseudobarrel domain
CDDcd100173.04E-2587176No hitNo description
SMARTSM010191.1E-2089193IPR003340B3 DNA binding domain
PfamPF023621.0E-2789192IPR003340B3 DNA binding domain
PROSITE profilePS5086314.62189193IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MEFTATSSSS RFSKGDAEDA EQEEPSRREI PFMTAAASSS AAASASVSAS GGSSPPFRSG  60
DGGAGASGSG GGGGGDAEAA EAVEKEHMFD KVVTPSDVGK LNRLVIPKQY AEKYFPLDSA  120
ANEKGLLLNF EDSAGKPWRF RYSYWNSSQS YVMTKGWSRF VKEKRLDAGD TVSFSRGARA  180
AADRLFIDWK RRADSHRDHH HPLLRFPGRL SLPMMPLASH YSPWGVGGSG GRSGFFLPPS  240
PPATLYEHRL RQGFDFRGGM NPAMGLGIRQ PQLLLFGSAT SRMPPHHAHA PPLLLPRAPP  300
LHHYTLQQST AAGPSSVVLD SVPVIESPTT TATKKRVRLF GVNLDNPHSS GNGAGGDGES  360
SNNHGGRTLS SSLQMPASAA WRPRDPTLRL LEFPSHGAES SPGQSSPSSS SSSKRDARSS  420
ALDLDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-58841923113B3 domain-containing transcription factor NGA1
5os9_B3e-58841923113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g51840.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1099081e-144AK109908.1 Oryza sativa Japonica Group cDNA clone:002-149-G07, full insert sequence.
GenBankAP0041781e-144AP004178.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1123_G04.
GenBankAP0149581e-144AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755835.10.0B3 domain-containing protein Os02g0683500
SwissprotQ6EU301e-133Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A0Q3I4L90.0A0A0Q3I4L9_BRADI; Uncharacterized protein
STRINGBRADI3G51840.11e-166(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-57B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]