PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g51757.4.p
Common NameBRADI_3g51757
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 268aa    MW: 29703.6 Da    PI: 9.4797
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g51757.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.2e-133276147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Bradi3g51757.4.p 32 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 76
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.25E-172682IPR009057Homeodomain-like
PROSITE profilePS5129415.4082781IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.1E-73082IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-183079IPR006447Myb domain, plants
SMARTSM007175.3E-113179IPR001005SANT/Myb domain
PfamPF002492.0E-113276IPR001005SANT/Myb domain
CDDcd001671.21E-83477No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MVSANAPPPQ LAEAGDDASK KVRKPYTITK SRESWTEQEH DKFLEALQLF DRDWKKIEAF  60
VGSKTVIQIR SHAQKYFLKV QKNGTSEHVP PPRPKRKAAH PYPQKASKNE PGYTLKTDAS  120
SMLRNSGMNV AVSSWTHNSI PPVVASSLVK DLGAGSMGPN IFCSSSSEGP PRAWQPGETN  180
DQINQVPSLH TKPDFAQVYS FLGSVFDPST NGHLQKLKEM NPIDFETALL LMRNLSINLT  240
SPDFEDQKLF LSYKETAKDF NSMLVSP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g51757.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3548340.0AK354834.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1011N06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235824.10.0protein REVEILLE 6 isoform X2
SwissprotQ8H0W39e-96RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A0Q3FNN30.0A0A0Q3FNN3_BRADI; Uncharacterized protein
STRINGBRADI3G51757.20.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.28e-84MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]