PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g51685.1.p | ||||||||
Common Name | BRADI_3g51685, LOC100824307 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GRF | ||||||||
Protein Properties | Length: 215aa MW: 22555.5 Da PI: 10.0486 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79 | 4.6e-25 | 130 | 174 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e Bradi3g51685.1.p 130 EPEPGRCRRTDGKKWRCSRDVVQGHKYCERHVHRGRGRSRKPVEG 174 69****************************************986 PP | |||||||
2 | QLQ | 51.9 | 2.3e-18 | 64 | 100 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s +T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k Bradi3g51685.1.p 64 SVLTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWK 100 5689********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.7E-5 | 64 | 100 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.619 | 65 | 100 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 7.8E-11 | 66 | 99 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.31 | 130 | 174 | IPR014977 | WRC domain |
Pfam | PF08879 | 7.6E-21 | 131 | 173 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MGEEKEADSP QPPPSKLPRL SRGDSNAGAV TMAASSPLVL GLGLGLGGGE RQQDVAAQAA 60 DSKSVLTFMQ QQELEHQVLI YRYFAAGAPV PVHLVLPIWK SVAASSFGPN RFPSLIGLGS 120 LCFDYRSSME PEPGRCRRTD GKKWRCSRDV VQGHKYCERH VHRGRGRSRK PVEGGASAAA 180 AQHNGTTTSG LGLGGFSSGH GVLLAAHGAS TRAT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g51685.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP099737 | 1e-169 | FP099737.1 Phyllostachys edulis cDNA clone: bphyst023e19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235821.1 | 1e-156 | growth-regulating factor 10 | ||||
Swissprot | Q6EPP9 | 4e-91 | GRF10_ORYSJ; Growth-regulating factor 10 | ||||
TrEMBL | I1ICL4 | 1e-154 | I1ICL4_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G51685.1 | 1e-155 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6221 | 30 | 51 | Representative plant | OGRP460 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36400.1 | 6e-38 | growth-regulating factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g51685.1.p |
Entrez Gene | 100824307 |
Publications ? help Back to Top | |||
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