PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g51630.2.p
Common NameBRADI_3g51630, LOC100845084
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 228aa    MW: 24179 Da    PI: 6.247
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g51630.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-1755104255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         kGVr++   grWv+e+r+p     +  +r++lg+f tae+Aa+a++ a+++l+g
  Bradi3g51630.2.p  55 VLKGVRRRN-PGRWVCEVREP-----HskQRIWLGTFETAEMAARAHDVAALALRG 104
                       569***887.9******9996.....335*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-1254104IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-2055113IPR016177DNA-binding domain
PROSITE profilePS5103221.49655112IPR001471AP2/ERF domain
PRINTSPR003674.4E-75667IPR001471AP2/ERF domain
CDDcd000181.61E-1957114No hitNo description
SMARTSM003805.7E-2657118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-2957114IPR001471AP2/ERF domain
PRINTSPR003674.4E-77894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009631Biological Processcold acclimation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDLGALSSDY SSGTPSPVAA DGDEGGGFST YMTVSSAPPK RRAGRTKFKE TRHPVLKGVR  60
RRNPGRWVCE VREPHSKQRI WLGTFETAEM AARAHDVAAL ALRGRAATLN FADSPRRLRV  120
PAMGASHDEI RRAAAEAAEA FMPAPDHQAR SNAAVQEQLA GADAPSAAVQ FLSDPYYEMG  180
NGMDFGMQGY LDMAQGMLID PPPMAAGSSA GGAGEGDHDG EVNLWSY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00644PBMTransfer from LOC_Os02g45450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g51630.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4182041e-131AF418204.1 Hordeum vulgare subsp. vulgare CRT/DRE binding factor 1 (CBF1) mRNA, complete cds.
GenBankAY7858361e-131AY785836.1 Hordeum vulgare subsp. vulgare cultivar Morex HvCBF1 (CBF1) gene, complete cds.
GenBankAY7858371e-131AY785837.1 Hordeum vulgare subsp. vulgare cultivar Dicktoo HvCBF1 (CBF1) gene, complete cds.
GenBankAY7858391e-131AY785839.1 Hordeum vulgare subsp. vulgare cultivar 88Ab536 HvCBF1 (CBF1) gene, complete cds.
GenBankJF7966541e-131JF796654.1 Hordeum vulgare subsp. spontaneum isolate T31 CBF protein 1 (CBF1) gene, complete cds.
GenBankJF7966551e-131JF796655.1 Hordeum vulgare subsp. spontaneum isolate T1 CBF protein 1 (CBF1) gene, complete cds.
GenBankJF7966771e-131JF796677.1 Hordeum vulgare isolate T2 CBF protein 1 (CBF1) gene, complete cds.
GenBankJF7966781e-131JF796678.1 Hordeum vulgare isolate T32 CBF protein 1 (CBF1) gene, complete cds.
GenBankJN9871931e-131JN987193.1 Triticum aestivum AP2 domain CBF protein (CBFI) mRNA, CBFI-1.3 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570097.11e-166dehydration-responsive element-binding protein 1G
SwissprotQ6EP771e-103DRE1G_ORYSJ; Dehydration-responsive element-binding protein 1G
TrEMBLI1ICK81e-164I1ICK8_BRADI; Uncharacterized protein
STRINGBRADI3G51630.11e-165(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.12e-35dehydration response element B1A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP
    Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.
    Biotechnol. Lett., 2008. 30(12): p. 2191-8
    [PMID:18779926]