PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g51610.1.p
Common NameBRADI_3g51610, LOC100844777
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 286aa    MW: 29436.4 Da    PI: 4.5107
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g51610.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-1792140255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        y+G+r ++ +g+Wv+eIr+p+    + +r++lg++ tae+Aa+a++ a+++l+g
  Bradi3g51610.1.p  92 FYRGIR-CR-NGKWVSEIREPR----KaRRIWLGTYPTAEMAAAAYDVAARALRG 140
                       79***9.66.7*********94....36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.29792148IPR001471AP2/ERF domain
SMARTSM003804.4E-2792154IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-1892148IPR016177DNA-binding domain
CDDcd000185.24E-1793148No hitNo description
PfamPF008472.1E-993140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-2793148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAEPEQPSAP SSSAPAPPQL QVAADNNPTT VDECSDPGGN SAASSAHSPA PAPQQLARDD  60
TVGIITTAMG AAAAATSSSG EPSPRSTGRH PFYRGIRCRN GKWVSEIREP RKARRIWLGT  120
YPTAEMAAAA YDVAARALRG PDAVLNFPGA TATRPAPASA SPEDIRAAAA AAAAALQPII  180
DKPGARAPEA DAAAADPAAA AEQVQRHHDQ TGSAAAGGDE PRQKEIGNEG EEFMDEEAIF  240
EMPQMLRNMA AGMMMSPPRL SPTASDEWPA DPSGAGESLW SYHDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-13901481272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g51610.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236849.10.0ethylene-responsive transcription factor ERF027
SwissprotQ9FJ903e-46ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLI1ICK60.0I1ICK6_BRADI; Uncharacterized protein
STRINGBRADI3G51610.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.18e-33ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]