PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g51540.4.p | ||||||||
Common Name | BRADI_3g51540, LOC100841844 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 792aa MW: 85339.6 Da PI: 5.3763 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.6 | 3.3e-21 | 88 | 143 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r+eL+++l+L+ rqVk+WFqNrR+++k Bradi3g51540.4.p 88 KKRYHRHTPQQIQELEALFKECPHPDEKQRAELSRRLSLDARQVKFWFQNRRTQMK 143 678899***********************************************999 PP | |||||||
2 | START | 177.9 | 6.1e-56 | 302 | 533 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS...........SCEEEEEEEECCSCH.HHHHHHHHCCCGGCT-TT-S....E CS START 1 elaeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv..........dsgealrasgvvdmv.lallveellddkeqWdetla....k 78 ela +a++el+k+a++++p+Wv+ +++++e+l +e + + +ea+r+sg+v+ + ++ lve+l+d + +W+ ++ k Bradi3g51540.4.p 302 ELAISAMDELIKMAQVDDPLWVTGLPGSPNKETLNFEEYHSFlpgigmkpagFVSEASRESGLVIIDnSVALVETLMDER-RWSDMFScmiaK 393 57889********************7777777776665554477777***************998651669*********.************ PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECT CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksn 159 a++le +s+g g l lm+aelq+lsplvp R++ f+R+++ql +g w++vdvS+d ++ ++ ++++lpSg+++++++ Bradi3g51540.4.p 394 ATILEEVSTGiagsrnGSLLLMKAELQVLSPLVPiREVIFLRFCKQLAEGAWAVVDVSIDGLMRDQNsattsTAANLKCRRLPSGCVMQDTPS 486 ***********************************************************853222222245689999**************** PP CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 g +kvtwveh++++++++h+ +r+l++sgla+ga++w+atlqrqce+ Bradi3g51540.4.p 487 GFCKVTWVEHTEYDEASVHQFYRPLLRSGLAFGASRWLATLQRQCEC 533 *********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.67E-21 | 71 | 145 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.4E-23 | 75 | 145 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.123 | 85 | 145 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-19 | 86 | 149 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.20E-19 | 87 | 145 | No hit | No description |
Pfam | PF00046 | 9.3E-19 | 88 | 143 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 120 | 143 | IPR017970 | Homeobox, conserved site |
SuperFamily | SSF55961 | 1.1E-28 | 293 | 533 | No hit | No description |
PROSITE profile | PS50848 | 45.872 | 293 | 536 | IPR002913 | START domain |
CDD | cd08875 | 2.37E-109 | 297 | 532 | No hit | No description |
SMART | SM00234 | 3.1E-39 | 302 | 533 | IPR002913 | START domain |
Pfam | PF01852 | 1.2E-48 | 303 | 533 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.56E-22 | 554 | 758 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 792 aa Download sequence Send to blast |
MSFGGLFDGG GGGGMQFPYP GGFSSSPALS LALDNAGGIG GRMFADGAMA GDAEAQNDSR 60 SGSDHLDAIS GVGDDDDDAE PSNPRKRKKR YHRHTPQQIQ ELEALFKECP HPDEKQRAEL 120 SRRLSLDARQ VKFWFQNRRT QMKTQLERHE NALLKQENDK LRAENMTIRE AMRSPMCGGC 180 GSPAMLGEVS LEEQHLRIEN ARLKDELNRV CALATKFLGK PVSLMSPLQL QPHLSMHLPN 240 SSLELAVGGM GGIGSMQPTL HGTMSEFAGG ASSSMGTVIT PARATGSAIA SITDIDRSMF 300 LELAISAMDE LIKMAQVDDP LWVTGLPGSP NKETLNFEEY HSFLPGIGMK PAGFVSEASR 360 ESGLVIIDNS VALVETLMDE RRWSDMFSCM IAKATILEEV STGIAGSRNG SLLLMKAELQ 420 VLSPLVPIRE VIFLRFCKQL AEGAWAVVDV SIDGLMRDQN SATTSTAANL KCRRLPSGCV 480 MQDTPSGFCK VTWVEHTEYD EASVHQFYRP LLRSGLAFGA SRWLATLQRQ CECLAILMSP 540 PTVAASEPMA ISLEGKRSML KLARRMTDNF CAGVSASSAR EWSKLDGATG SIGEDVRVMA 600 RKSVSEPGEP PGVVLSAATS VWVPVAPEKL FDFLRDEQLR AEWDILSNGG PMQEMTRIAK 660 GHQNGNSVSL LRASAMSANQ SSMLILQETC TDASGSIVVY APVDIPAMQL VMEGRDSTCV 720 ALLPSGFAIL PDGPSIEQKT GGSLLTVAFQ ILVNSQPTAK LTVESVETVN NLISCTIKKI 780 KTALLCTTPD C* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 83 | 89 | PRKRKKR |
2 | 84 | 88 | RKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00418 | DAP | Transfer from AT3G61150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g51540.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF857484 | 0.0 | KF857484.1 Avena strigosa cultivar S75 homeobox-leucine zipper protein (HDZ1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003570085.1 | 0.0 | homeobox-leucine zipper protein ROC5 | ||||
Swissprot | Q6EPF0 | 0.0 | ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5 | ||||
TrEMBL | I1ICJ5 | 0.0 | I1ICJ5_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G51540.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 0.0 | homeodomain GLABROUS 1 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g51540.4.p |
Entrez Gene | 100841844 |
Publications ? help Back to Top | |||
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