PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g51320.1.p
Common NameBRADI_3g51320, LOC100844900
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 726aa    MW: 84633.9 Da    PI: 7.7737
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g51320.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.71.7e-1753137190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fY+ YAk+ GF v++++ ++  ++++    t+ Cs++gk++ ++k+   + ++++ tr++C ak++   +  +k+++t++ l+HnH+ +
  Bradi3g51320.1.p  53 RFYKGYAKTKGFGVVRRTARHG-DDRKLNYFTLACSRQGKAQYSSKN---SYNPNPLTRMQCPAKVNFACR-GEKFCITSVTLDHNHPTS 137
                       5****************99998.77779***************9999...99*****************99.9**************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1453137IPR004330FAR1 DNA binding domain
PfamPF105512.4E-38258352IPR018289MULE transposase domain
PROSITE profilePS5096610.052552588IPR007527Zinc finger, SWIM-type
PfamPF044345.0E-5558584IPR007527Zinc finger, SWIM-type
SMARTSM005751.7E-4563590IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MESNLPSDEV ADQHNGVFHE DDEDAFILEE IGDSLDGQPK KGIMFDSEDD AVRFYKGYAK  60
TKGFGVVRRT ARHGDDRKLN YFTLACSRQG KAQYSSKNSY NPNPLTRMQC PAKVNFACRG  120
EKFCITSVTL DHNHPTSPSK SRFLRSHKKL DLHAKRMLEL NDQAGIRMNK NFGSLVMEAG  180
GYEQLEFGEK ECRNYLQEKR RLKLGAGDAH AVYQYFLHMQ SKDPDFFHVM DVVEDGRLRN  240
VFWADARSRA TYEPYWDVIT FDTTYLTNKY SMPFAPFVGV NHHGESVLLG CGLLSNEDTE  300
TFIWLFKSWL CCMSNKAPNA IITDQCKAMQ NAIEEVFPQA RHRWCIWHIM KKILEKLSGY  360
EKYENIKYTM SNAVYDSLTK HDFDEAWLKM IKKYELHDNE WLASLYGNKY RWVPAYVKDT  420
FWAGMSSRQR SESVNAFFDG YVNARTTLKQ FVEQYENALR DKVEKENKAD SKSFQEVIPC  480
ITHYDFERQF QETYTNAKFK EFQEQLRGKI YCYPTQVNKE GSLFTFRVRE DRKIFFEGED  540
GEIKDKRIIS EFTVLFDQGE CDVQCACRLF EFRGILCSHI LSVLALMEIT EVPSRYILQR  600
WRKDFKRKHT FIKCSYDDML NTPLVQRYDN LCKHSREVAE NGAESDALYA LVMDGLGQLQ  660
IKIDAHRASQ EVQEEDQTKK HEETMSNKEK IVLSPISAHS VGRPRSKRKE SKVDQVVKRL  720
RAKKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1702712RPRSKRKESKV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00434DAPTransfer from AT4G15090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g51320.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756066.20.0protein FAR1-RELATED SEQUENCE 6
TrEMBLI1ICH10.0I1ICH1_BRADI; Uncharacterized protein
STRINGBRADI3G51320.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-129FAR1-related sequence 5