PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g51090.1.p
Common NameBRADI_3g51090, LOC100830824
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 602aa    MW: 63298.7 Da    PI: 8.7853
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g51090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-0583105123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ C+k F r  nL+ H r H
  Bradi3g51090.1.p  83 FVCEVCSKGFQREQNLQLHRRGH 105
                       89*******************88 PP
2zf-C2H212.20.00056160182123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++C+k++  +s+ k H + +
  Bradi3g51090.1.p 160 WKCEKCSKRYAVQSDWKAHSKIC 182
                       58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.0E-582105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.8E-782105No hitNo description
SMARTSM003550.008683105IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.03283105IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-4148181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.8E-7155180No hitNo description
SMARTSM00355130160180IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MASNSSAAAV AALFGVRDIG DHQDQIKPLL AQQHRQQPLM ALTAGPDQAT ATVPPVKKKR  60
NLPDPDAEVI ALSPKTLMAT NRFVCEVCSK GFQREQNLQL HRRGHNLPWK LKQKDPNQVQ  120
RRRVYLCPEP TCVHHEPARA LGDLTGIKKH FCRKHGEKKW KCEKCSKRYA VQSDWKAHSK  180
ICGTREYRCD CGTLFSRRDS FITHRAFCDA LAQESARLPP AAAAAHLYGT SAANMVLSLS  240
HQQVHDAHGQ YHQASPDLLR FGNGISARLD HLLSSSSSPG AASAFRHQLP PHPQAPQALF  300
HLGSSSARQE DQLFGDGGSS NNPHGAFLQG KPFHGLMQLP DLQGNGSGGT ASAPPGLFNL  360
GYIASSSGAN SSGTSSHGHA SQGHMTNDQI SEGAGGGGAG SENSGAVYFN ASGVNFSGGE  420
HQQHQVVATA GMYNEQQQAV MLPQMSATAL LQKAAQMGSG SSANGASVFG GFMGSSVAQQ  480
GRGPMVDQGQ MHLQSLMNSL AAGGGGGGSG MFGGGANGNS RCMIDPRLYE MEHEVKFSQQ  540
AGSNGGGEVT RDFLGVGAGV DMRGMSVAAR GEHQGGGGGG MSFLETEMKS ASSPFNGGRM  600
Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-35156218365Zinc finger protein JACKDAW
5b3h_F8e-35156218365Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g51090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3591320.0AK359132.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1090F15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570050.10.0protein indeterminate-domain 12
TrEMBLI1ICE50.0I1ICE5_BRADI; Uncharacterized protein
STRINGBRADI3G51090.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-105C2H2 family protein