PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi3g50790.1.p | ||||||||
Common Name | LOC100825610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 320aa MW: 33113.9 Da PI: 6.9183 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 5 | 26 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+++F ++ L H+r+H Bradi3g50790.1.p 5 TCKLCSRRFASPRALAGHMRSH 26 7********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.827 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0056 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.4E-7 | 5 | 26 | No hit | No description |
Pfam | PF13912 | 7.8E-5 | 5 | 26 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.4E-7 | 169 | 196 | No hit | No description |
Pfam | PF13912 | 2.4E-9 | 174 | 196 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.28 | 174 | 196 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.078 | 174 | 196 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 176 | 196 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.5E-10 | 237 | 259 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.6 | 237 | 259 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.954 | 237 | 259 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 239 | 259 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 320 aa Download sequence Send to blast |
MTKTTCKLCS RRFASPRALA GHMRSHSLAA AAAAKQQQIS SASSASTSFI AAAANDEAVG 60 FKKPLPIYAL RENPKRSLRV SDAGFSDHES EAESTAPRGK RAHAAAAEPL SSVSDAATPE 120 EDVALSLMML SRDSWPSSVG DYWDDDDGSD GDGGGYALPA PDPAPPVVEK RTRFQCGACK 180 KVFRSYQALG GHRASHVRGG RGGCCAPPVV ASPPPPQPPL VERDADEAME DGKGQPRECP 240 YCYRAFASGK ALGGHKRSHV CSAAAAAAAA AAAAQAEEAA APRDPIKAFG MIDLNVALPV 300 EDVELSAVSD PRFSSNPGS* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi3g50790.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003570033.1 | 0.0 | zinc finger protein ZAT1 | ||||
TrEMBL | I1ICA5 | 0.0 | I1ICA5_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G50790.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3518 | 33 | 77 | Representative plant | OGRP2404 | 10 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60580.1 | 2e-23 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi3g50790.1.p |
Entrez Gene | 100825610 |