PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g50780.1.p
Common NameBRADI_3g50780, LOC100837092
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 633aa    MW: 66848.1 Da    PI: 6.436
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g50780.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-05117134219
                       EETTTTEEESSHHHHHHH CS
           zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                       +C++Cgk F+++ +L  H
  Bradi3g50780.1.p 117 VCENCGKEFTSWKSLLDH 134
                       6***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003555.23961IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.65E-53961No hitNo description
PROSITE profilePS501578.7043961IPR007087Zinc finger, C2H2
PfamPF139128.7E-53961IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
SuperFamilySSF576671.65E-5111136No hitNo description
SMARTSM00355180116136IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39116143IPR007087Zinc finger, C2H2
SuperFamilySSF576679.0E-8301324No hitNo description
PROSITE profilePS5015710.221302329IPR007087Zinc finger, C2H2
SMARTSM003550.13302324IPR015880Zinc finger, C2H2-like
PfamPF139124.5E-9302326IPR007087Zinc finger, C2H2
PROSITE patternPS000280304324IPR007087Zinc finger, C2H2
SuperFamilySSF576679.0E-8430457No hitNo description
PfamPF139122.0E-12434458IPR007087Zinc finger, C2H2
SMARTSM003550.46435457IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349435457IPR007087Zinc finger, C2H2
PROSITE patternPS000280437457IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MAMVMENQQP VAPQMRMIPA PPPRPPPPPP PVPPQVFKHH CKVCKKGFMC GRALGGHMRA  60
HGIADVDGLS VEEDMLDDDD SEPYGESSDQ AGSPSTTTTK RMYGLRANPG RLRNCRVCEN  120
CGKEFTSWKS LLDHGRCSFG EDDEGLDGEG SLRSSSPRNG MEDEEEEEEE GDVALASGWS  180
KGKRSRRAKV MLLGSGTRTE LQHLPPASSE EEDLANCLVM LSSSRVTQPT DVIADVDQAE  240
SCASASKDEE MIRNKFLLPQ PISIIAPIAA SATQTMKFPV PHPVPQQVVV AQHVPAVPRG  300
LFECKACKKV FTSHQALGGH RASHKKVKGC FAAKLESSRN ETAAAAHQHH QSVATATHYD  360
SNTKASISEV VDTSTTDLKT SASVDANADG GKVSTSGGEI VIVATTAAPE TGIADVAPAA  420
PSSALAPFKK KGKVHECSIC HRVFTSGQAL GGHKRCHWLT SSATDPAAAC TVAKLQSTVV  480
PDHLMAAMCH HLTLGRPMFD VAADQRILDL NVPTNPSSTA VDQAAAAIAA RQAAELNDIP  540
LCLNAPASMY VQSWTGHSNA SHVNKTGTSS RNDAAGGGGA ATEDEADSTS AKRAKIGDLK  600
DMKVAGESLP WLQVGIGISS SECKDKTAQD QE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g50780.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572779.10.0uncharacterized protein LOC100837092
TrEMBLI1ICA40.0I1ICA4_BRADI; Uncharacterized protein
STRINGBRADI3G50780.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Representative plantOGRP2521820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.13e-15C2H2 family protein