PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g50620.1.p
Common NameBRADI_3g50620, LOC100834022
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 263aa    MW: 27545.7 Da    PI: 5.3805
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g50620.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-1981131155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       + y+GVr+++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Bradi3g50620.1.p  81 PSYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 131
                       57*****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.70E-2381142No hitNo description
PfamPF008471.1E-1381131IPR001471AP2/ERF domain
PROSITE profilePS5103223.78882140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-3182141IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-2082141IPR016177DNA-binding domain
SMARTSM003803.7E-3582146IPR001471AP2/ERF domain
PRINTSPR003675.8E-118394IPR001471AP2/ERF domain
PRINTSPR003675.8E-11105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEPDAIHAPT TSSSSSSCDS TVIGGTQETS KKNNPKHLKR KRAAISPETD VGAAGGGEES  60
SCCTTAVDER TTKISAAGRH PSYRGVRRRS WGKWVSEIRE PRKKSRIWLG TFPTAEMAAR  120
AHDVAALAIK GAAARLLNFP HLVGELPRPA SASPADIQAA AALAAAQCEP PPAAASSSSV  180
DAETETSASA SASAASSFGS EEKQAENALF DLPDLLLDLR DGLWCSPTAW ASAPDEYSVE  240
LQEPLLWVEQ CWMDAAAPVH PA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-19801411273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g50620.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3076624e-76AJ307662.1 Oryza sativa genomic DNA fragment, chromosome 2.
GenBankAP0050064e-76AP005006.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519E06.
GenBankAP0149584e-76AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY3452324e-76AY345232.1 Oryza sativa transcription factor Rap212 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235787.10.0ethylene-responsive transcription factor ERF038
SwissprotQ8LBQ77e-49ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLI1IC830.0I1IC83_BRADI; Uncharacterized protein
STRINGBRADI3G50620.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.16e-30ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]