PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g50508.1.p
Common NameBRADI_3g50508, LOC100832784
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 336aa    MW: 35715.6 Da    PI: 4.7952
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g50508.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-19139190256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       +y+GVr+++ +g+++AeIrdp+++g   r++lg+++t  eAa+a+++a+ +++g+
  Bradi3g50508.1.p 139 KYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTYDTSIEAARAYDRAAFRMRGA 190
                       8********.**********96655..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-32138198IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-22139198IPR016177DNA-binding domain
PROSITE profilePS5103224.25139197IPR001471AP2/ERF domain
CDDcd000181.43E-30139198No hitNo description
PfamPF008474.0E-15139189IPR001471AP2/ERF domain
SMARTSM003804.7E-37139203IPR001471AP2/ERF domain
PRINTSPR003672.1E-13140151IPR001471AP2/ERF domain
PRINTSPR003672.1E-13179199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MTMDFSGDID DFSLQYIHEQ LLGADACLQL QGAVPVAAVD DFAPHLQQPS DFQLPSEFSL  60
PHLLPPPGYV DLTSQYPDAD AYGAAEPVMI RFGGENSPVP SSDPARRRPL LTVSLPPASH  120
PSWAAAPEAA ADALNDFRKY RGVRQRPWGK FAAEIRDPNK RGSRVWLGTY DTSIEAARAY  180
DRAAFRMRGA KAILNFPNEV ASRGATDLLV PPPPPAVSHN NKRKRADVVD EEETINAKNV  240
KAEAAASAAA SPASSLTATS TVTTTTTSSS SANTTPSSSS SDYYYQAGGN SETFGPLASS  300
TSWTWEQLLA EGMFGGSLSP HPQLAGGFPE VCTVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-27138202468ATERF1
3gcc_A3e-27138202468ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g50508.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3076628e-87AJ307662.1 Oryza sativa genomic DNA fragment, chromosome 2.
GenBankAP0046768e-87AP004676.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1003_B06.
GenBankAP0050068e-87AP005006.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519E06.
GenBankAP0149588e-87AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY3393788e-87AY339378.1 Oryza sativa (japonica cultivar-group) Ap25 mRNA, complete cds.
GenBankCP0126108e-87CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572768.20.0ethylene-responsive transcription factor 6
TrEMBLA0A0Q3IJF30.0A0A0Q3IJF3_BRADI; Uncharacterized protein
STRINGPavir.Aa01181.1.p2e-92(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.14e-35ethylene responsive element binding factor 5