PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g50490.1.p
Common NameBRADI_3g50490, LOC100844374
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 297aa    MW: 30960.7 Da    PI: 6.7637
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g50490.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.4e-19142192255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +++GVr+++ +g+++AeIrdp +ng  +r++lg+f++ae+Aa a+++a+ +++g
  Bradi3g50490.1.p 142 HFRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFDSAEDAAVAYDRAAYRMRG 192
                       79*******.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.32E-29141200No hitNo description
SuperFamilySSF541711.05E-22142202IPR016177DNA-binding domain
SMARTSM003807.2E-38142206IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-31142200IPR001471AP2/ERF domain
PfamPF008473.0E-12142192IPR001471AP2/ERF domain
PROSITE profilePS5103223.604142200IPR001471AP2/ERF domain
PRINTSPR003678.0E-10143154IPR001471AP2/ERF domain
PRINTSPR003678.0E-10166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MMMLNPASGA AALESIRHQL LELEEPPAPS RPAYCRSTSF GSLVADQWSS SLPFRPNDAD  60
DMVVYGALRD AFSCGWLPDG SFAAVKPEPL PSSPDSYDSS CCLGTFLASP GPPETPTSMG  120
TQEDEAELVQ SAAGNSSSRG KHFRGVRQRP WGKFAAEIRD PAKNGARVWL GTFDSAEDAA  180
VAYDRAAYRM RGSRALLNFP LRIGSEIAAA AAAAAAVGDK RPCPQPQPAN SDSSSPSSSS  240
GTSSGSGPSK RRKRGEAAAA SMAMALVPPA PVQAPVQLTL PAQPWFAAGH VQQLVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-38138205168ATERF1
3gcc_A3e-38138205168ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g50490.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570010.10.0ethylene-responsive transcription factor 1
TrEMBLI1IC650.0I1IC65_BRADI; Uncharacterized protein
STRINGBRADI3G50490.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-39ethylene responsive element binding factor 1