PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g49810.1.p | ||||||||
Common Name | BRADI_3g49810, LOC100827069 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 471aa MW: 50937 Da PI: 7.0736 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.9e-19 | 217 | 267 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge Bradi3g49810.1.p 217 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 267 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.95E-32 | 216 | 276 | No hit | No description |
SMART | SM00380 | 5.9E-39 | 217 | 280 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.998 | 217 | 274 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.1E-23 | 217 | 275 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-32 | 217 | 275 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.6E-11 | 218 | 229 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-12 | 218 | 267 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.6E-11 | 240 | 256 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MEAADRGAGG RGRERRWKGK GASSAAEKQR PLPPQQLAPV LEDAPPAALL RPLKKPDCRL 60 HRSVSSLSSA PASSGSSSVS DPISPPAVGS SLPYPSPGST RHIFPFAYDP SPAAAPRLLQ 120 LLQYSSSLYQ QQPLLPQQLQ QQQQQTPLQN QQMISFGDAQ HEAQQPPLIP PQLMAPEALR 180 YWSEALNLSP RGVLGGLVPV PQSLFQHLLR APVPAKLYRG VRQRHWGKWV AEIRLPRNRT 240 RLWLGTFDTA EDAAMAYDRE AFKLRGENAR LNFPDLFLGK GRAGGSGRTS ASAAASRSSS 300 SCSSAPPTPD ETRTQQARQA LLLREQQQQQ QQEHLEEPSD IEPTPLFSAA EEQEGIPEAE 360 QSPQLLHKAE QQCGEGSTAM AQAPVTSGGV WGPADEAWFS AWGPGSSVWD YDMDSAHGLF 420 LQSRFAGEQT GMDYVPSAPE AHMAPAPGAA SPSLPPRPPP SHSPTFVWKD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-20 | 216 | 274 | 4 | 63 | ATERF1 |
3gcc_A | 8e-20 | 216 | 274 | 4 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g49810.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003569954.1 | 0.0 | ethylene-responsive transcription factor ERF054 | ||||
TrEMBL | A0A0Q3I3P8 | 0.0 | A0A0Q3I3P8_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G49810.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3691 | 32 | 68 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 9e-39 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g49810.1.p |
Entrez Gene | 100827069 |