PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g49660.1.p | ||||||||
Common Name | BRADI_3g49660, LOC100822452 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | TCP | ||||||||
Protein Properties | Length: 200aa MW: 20912.5 Da PI: 10.5953 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 116 | 4.8e-36 | 46 | 147 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg... 88 a+ k++ +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++ +++ssss + Bradi3g49660.1.p 46 APSKKSVKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSIVAATGSGTTPAAFVsssAPSTSSSSR-----Hgtl 133 7899************************************************************99999666221122222222.....1233 PP TCP 89 .............k 89 + Bradi3g49660.1.p 134 lgkrprqdfdgasS 147 44444444544430 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.4E-31 | 51 | 136 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.452 | 52 | 106 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MSSRDIATAG GIFHVYEHLP MTASTAWAPA AGADAGGGGL LLSSPAPSKK SVKDRHSKVN 60 GRGRRVRMPI VCAARVFQLT RELGLKSDGQ TIEWLLRQAE PSIVAATGSG TTPAAFVSSS 120 APSTSSSSRH GTLLGKRPRQ DFDGASSAFW ASALPRQADA WGFSPLETQA AESYMPMAHH 180 LNLVAALSGA ARRAEEETR* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00655 | PBM | Transfer from LOC_Os02g42380 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g49660.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095725 | 2e-98 | FP095725.1 Phyllostachys edulis cDNA clone: bphyem123a10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003572742.1 | 1e-142 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 4e-39 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | I1IBW4 | 1e-141 | I1IBW4_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G49660.1 | 1e-141 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 | Representative plant | OGRP922 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 5e-34 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g49660.1.p |
Entrez Gene | 100822452 |