PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g49320.1.p
Common NameBRADI_3g49320
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 731aa    MW: 78534.3 Da    PI: 7.5331
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g49320.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.6e-24159260199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g sW++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   +
  Bradi3g49320.1.p 159 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVVAKDVHGASWKFRHIYRGTPRRHLLTTGWSAFVNHKKLVAGDSIVFL--R 247
                       89****************************996555555..8************************************************..3 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                        + + l+v+++r+
  Bradi3g49320.1.p 248 GDAGDLHVGIRRA 260
                       478889*****97 PP
2Auxin_resp117.79.6e-39312395183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                       aa+ a ++++FevvY+Prast+eF+v+++ v++a++v++++GmRfkmafetedss++++ +Gtv+gv+ +dp+rWp+S+Wr+L+
  Bradi3g49320.1.p 312 AARLAGSGQPFEVVYYPRASTPEFCVRAAAVRAAMRVQWCPGMRFKMAFETEDSSRISWfMGTVAGVQVADPIRWPQSPWRLLQ 395
                       6778899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-37152262IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-29155271IPR015300DNA-binding pseudobarrel domain
CDDcd100173.28E-22158259No hitNo description
PfamPF023621.5E-21159260IPR003340B3 DNA binding domain
PROSITE profilePS5086312.872159261IPR003340B3 DNA binding domain
SMARTSM010193.2E-21159261IPR003340B3 DNA binding domain
PfamPF065072.6E-33312395IPR010525Auxin response factor
PROSITE profilePS5174512.34644724IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MPLLASASSS DSHHSQLTSS THHHHSRGNQ PPPCSGMITF GDLTDPAPGG AERCVDRQLW  60
LACAGGMCTV PPVGSSVYYF PQGHAEHALG LAAAGPGVGG LSRVPALLPC RVAAVRYMAD  120
PDTDEVFAGI RLVPLRQDVQ DDGAAAAGED EEHEKPASFA KTLTQSDANN GGGFSVPRYC  180
AETIFPRLDY SADPPVQTVV AKDVHGASWK FRHIYRGTPR RHLLTTGWSA FVNHKKLVAG  240
DSIVFLRGDA GDLHVGIRRA KRGFCGAEEG SLPGWENQQL YTMGPMRGGG NVSPSCKGGR  300
RGKVRAEDVA EAARLAGSGQ PFEVVYYPRA STPEFCVRAA AVRAAMRVQW CPGMRFKMAF  360
ETEDSSRISW FMGTVAGVQV ADPIRWPQSP WRLLQVTWDE PDLLQNVKRV SPWLVELVSS  420
MPAIHLASSF SPPRKKPRIP AYPEFPFEGQ LLNPSFPLNL VAHGHHHYHH TQSYHPSFFP  480
FPDGSAPPAG IQGARHAQFG PSLPDLHLTH LQSSLLNPGL RRHDHLTPAL VQPRISTDLT  540
IGSSPARKNG VSSTLPDDGA KKPKPSSGLV LFGQTILTEQ QMSRSDSAGA TSPAASGNSS  600
LNCDTEKAGN VSEGSGSGVI QNASPERLRW FGDGNSVSEL GLEPGQCKVF IESETVGRNL  660
DLSAMSSFEE LYGRLSELFC IESAELRSRV LYRGATGQVK HAGDESFSNF IKSARRLTIL  720
ADAGSDNIGS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-793541631388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g49320.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575407.20.0auxin response factor 8
SwissprotQ6K2230.0ARFH_ORYSJ; Auxin response factor 8
TrEMBLA0A2K2D4900.0A0A2K2D490_BRADI; Auxin response factor
STRINGBRADI3G49320.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16