PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g49180.1.p | ||||||||
Common Name | BRADI_3g49180, LOC100837713 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 249aa MW: 27328.8 Da PI: 7.9124 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 6.7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd lv ++q+G +W++ ++ g+ R++k+c++rw +yl Bradi3g49180.1.p 14 RGPWTAEEDRTLVAHIEQHGHSNWRALPKQAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.6e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE++ +++++++lG++ W+tIa++++ gRt++++k+ w+++l Bradi3g49180.1.p 67 RGNFTREEEDAIIQLHAMLGNR-WSTIAARLP-GRTDNEIKNVWHTHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.832 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.98E-30 | 10 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.90E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.418 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.88E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MGRAPCCEKM GLKRGPWTAE EDRTLVAHIE QHGHSNWRAL PKQAGLLRCG KSCRLRWINY 60 LRPDIKRGNF TREEEDAIIQ LHAMLGNRWS TIAARLPGRT DNEIKNVWHT HLKKRLESKQ 120 SGGGQAQAAP KRRAKKAPVA VTVSRTEVPT SVPVSPEQSL STSSGASGYS MEAPSLENAD 180 SVTSEEFQID DSFWAETLAM TVDSPRSGME SGDCLGVDGS SPSSSNADMD FWVKLFMQAG 240 DMQNLSQI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-27 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g49180.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM071921 | 1e-148 | HM071921.1 Leymus racemosus Myb3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003575391.1 | 0.0 | transcription factor MYB30 | ||||
Swissprot | Q6K1S6 | 1e-115 | MYB30_ORYSJ; Transcription factor MYB30 | ||||
TrEMBL | I1IBQ7 | 0.0 | I1IBQ7_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G49180.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 8e-78 | myb domain protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g49180.1.p |
Entrez Gene | 100837713 |
Publications ? help Back to Top | |||
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