PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g48886.1.p | ||||||||
Common Name | BRADI_3g48886, LOC100839418 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 269aa MW: 30004.3 Da PI: 4.8691 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed+ll+++v+q G g+W+++a+ g++R++k+c++rw +yl Bradi3g48886.1.p 15 KGPWTAQEDKLLLEYVRQQGDGRWNSVAKVTGLKRSGKSCRLRWVNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.5 | 2e-15 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+ +++++ ++G++ W+tIar ++ gRt++++k++w+++ Bradi3g48886.1.p 68 RGKITPQEERVILELHGLWGNR-WSTIARSLP-GRTDNEIKNYWRTH 112 8999******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.124 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.5E-29 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-15 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-24 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.52E-11 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.042 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-13 | 68 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-23 | 70 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.69E-9 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MEQFGWGREE GGWRKGPWTA QEDKLLLEYV RQQGDGRWNS VAKVTGLKRS GKSCRLRWVN 60 YLRPDLKRGK ITPQEERVIL ELHGLWGNRW STIARSLPGR TDNEIKNYWR THFKKGKPTS 120 KNIERARARF LKQRREIMEG YPRGQDDGED VAASVDNTGY AAAAAAVSHD ADEATVRPAA 180 PTQDEDMEVI MPDMDEFLQY HPMSAYFLQG CCVDGGTSAS ASDAGSSGEI DGGATWGSLW 240 NLDDDDVVLD DVDVVGACCW DSFGLAFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 15 | 115 | 7 | 106 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g48886.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK099283 | 1e-145 | AK099283.1 Oryza sativa Japonica Group cDNA clone:J023132O17, full insert sequence. | |||
GenBank | AK111807 | 1e-145 | AK111807.1 Oryza sativa Japonica Group cDNA clone:J013104N22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003572719.1 | 0.0 | myb-related protein Zm38 | ||||
TrEMBL | A0A0Q3M7E7 | 0.0 | A0A0Q3M7E7_BRADI; Uncharacterized protein | ||||
STRING | Traes_6DL_FDFCBA57D.1 | 1e-126 | (Triticum aestivum) | ||||
STRING | Traes_6DL_FDFCBA57D1.1 | 1e-126 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 5e-65 | myb domain protein 79 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g48886.1.p |
Entrez Gene | 100839418 |