PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g48697.1.p | ||||||||
Common Name | BRADI_3g48697 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | AP2 | ||||||||
Protein Properties | Length: 693aa MW: 73683 Da PI: 6.5746 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.6 | 3.5e-14 | 290 | 349 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g Bradi3g48697.1.p 290 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 349 57*******************666664477446**********99*************98 PP | |||||||
2 | AP2 | 49.7 | 8.9e-16 | 392 | 443 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Bradi3g48697.1.p 392 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 443 89****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.57E-16 | 290 | 359 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.0E-11 | 290 | 349 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.85E-20 | 290 | 359 | No hit | No description |
PROSITE profile | PS51032 | 18.861 | 291 | 357 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-14 | 291 | 357 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-28 | 291 | 363 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-6 | 292 | 303 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-10 | 392 | 443 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-18 | 392 | 452 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.02E-24 | 392 | 451 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.4E-18 | 393 | 451 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.467 | 393 | 451 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-33 | 393 | 457 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-6 | 433 | 453 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0019827 | Biological Process | stem cell population maintenance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 693 aa Download sequence Send to blast |
MASGNNWLEF SLSGQENPQP HRDSSPVAAI DISGSGDFYG LPTQPVPDTQ LGMPGHHASY 60 GVMEAFNRGT HETHDWSNMR GLDYNGGGSE LSMLVGSSAV GGKIRGAVEE ITEPKLEDFL 120 GGNSFVDSEQ DQAGAGGFLF SGVPMAPMAG SNSGSNTMEL SMIKTWLRNN QNHVSQPHPQ 180 QHQPQPHEEM SMSTDASASS FGDALGRNGV VPAAGSSQSQ SLALSMSTGS GSSHLPMVVA 240 GGSAAVVGAA DQPESSSSEN KRASGAMDSP GGAVEAVARK SIDTFGQRTS IYRGVTRHRW 300 TGRYEAHLWD NSCRREGQSR KGRQVYLGGY DKEDKAARAY DLAALKYWGT TTTTNFPINT 360 YEKEVDEMKH MTRQEYIAYL RRNSSGFSRG ASKYRGVTRH HQHGRWQARI GRVAGNKDLY 420 LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF DMNRYDVKSI LESSTLPVGG AARRLKDAPE 480 ATIWRAGDMD AGGSSISHQL TNNVGMGGMG PYAGSYHQGH GWPSTIVFQH QPSPLSVHYP 540 YALHQPPRGW CKPEQDVVAA ASHSLQELQQ LHLGTAHNFF QQASAGSTVY NGGINGAGFL 600 MPAPASTVVA EQGHSSTATN QGSICSYGDD EEGKLIGIGY DAMTMASTGD PYAAARAAGG 660 YGQLPQGSAS TVSIARANGC SNNWTSPFNG MG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g48697.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955732 | 0.0 | EU955732.1 Zea mays clone 1543867 protein BABY BOOM 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003575352.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL7 | ||||
Swissprot | Q8LSN2 | 1e-130 | BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2 | ||||
TrEMBL | A0A2K2D450 | 0.0 | A0A2K2D450_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G48697.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20840.1 | 1e-122 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g48697.1.p |