PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g48447.1.p | ||||||||
Common Name | BRADI_3g48447, LOC100834218 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | CO-like | ||||||||
Protein Properties | Length: 326aa MW: 34238 Da PI: 5.0992 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 26.4 | 1.5e-08 | 28 | 61 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkgH 37 +r C++++ ++l+C++++ +lC C H gH Bradi3g48447.1.p 28 ARPCDTCGVDAARLYCRTDGAYLCGGCDARAH-GH 61 578*****999********************9.88 PP | |||||||
2 | zf-B_box | 24.7 | 4.8e-08 | 71 | 116 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + C+ +e+ ++ C+ + lC+ C +H+ H++vp+ Bradi3g48447.1.p 71 VWLCDVCEQAPVAVTCRADAAALCAACDADIHSAnplagrHERVPV 116 679*****************************66999999999986 PP | |||||||
3 | CCT | 69.2 | 1e-23 | 245 | 287 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+l+RY+eKrk+R+F K+irY+sRKa+Ae+RpR+KGrF+k+ Bradi3g48447.1.p 245 REARLMRYREKRKNRRFHKTIRYASRKAYAETRPRIKGRFAKR 287 9****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 17 | No hit | No description |
PROSITE profile | PS50119 | 9.911 | 26 | 73 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 0.032 | 26 | 66 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.0E-6 | 29 | 61 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.30E-6 | 29 | 73 | No hit | No description |
PROSITE profile | PS50119 | 10.096 | 69 | 116 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.6E-13 | 69 | 116 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.3E-6 | 71 | 116 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.718 | 245 | 287 | IPR010402 | CCT domain |
Pfam | PF06203 | 4.8E-18 | 245 | 287 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MKAEEMPVVV GGAGGGCWGQ QQQQQQGARP CDTCGVDAAR LYCRTDGAYL CGGCDARAHG 60 HGGAGSRHAR VWLCDVCEQA PVAVTCRADA AALCAACDAD IHSANPLAGR HERVPVAPFF 120 GALAHEADAA AAHKEEDGSN EEAEAASWLL PEPGDSPEAE DTAAFFADSD AYLGLDLDFV 180 RSMDGINAIG VPVASSELDL AAAGTLFYPD HSMNHSVSSS EVAVVPDAMS LGAAAAVVVS 240 RGKDREARLM RYREKRKNRR FHKTIRYASR KAYAETRPRI KGRFAKRTGT GTADDDALEH 300 DDGPFSPAVS ALVASDGDYG IVPSF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g48447.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235683.1 | 0.0 | zinc finger protein CONSTANS-LIKE 3 | ||||
TrEMBL | A0A0Q3IIA7 | 0.0 | A0A0Q3IIA7_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G48447.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2191 | 32 | 72 | Representative plant | OGRP691 | 17 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24790.1 | 4e-49 | CONSTANS-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g48447.1.p |
Entrez Gene | 100834218 |