PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g47610.2.p
Common NameBRADI_3g47610
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 352aa    MW: 37678.1 Da    PI: 8.3398
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g47610.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.4e-1791141155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++y+GVr+++ +gr++AeIrdps+   ++r +lg+f+tae+Aa a++ a++ ++g
  Bradi3g47610.2.p  91 TQYRGVRRRP-WGRFAAEIRDPSS---KARRWLGTFDTAEQAACAYDVAARVFRG 141
                       58********.**********954...59*********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.10E-2791150No hitNo description
SMARTSM003806.2E-3492155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-3092150IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2192151IPR016177DNA-binding domain
PfamPF008479.3E-1092141IPR001471AP2/ERF domain
PROSITE profilePS5103223.19692149IPR001471AP2/ERF domain
PRINTSPR003672.9E-993104IPR001471AP2/ERF domain
PRINTSPR003672.9E-9115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0009880Biological Processembryonic pattern specification
GO:0010084Biological Processspecification of organ axis polarity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEGQWRRKAA RPPHHLLTQP PTPQRHTLSG TAHHSTLLLP ASISMDDTAT NEQLCHHAPA  60
PAHRHRSGSK RTPSAAAAGC DGCQPAGSRH TQYRGVRRRP WGRFAAEIRD PSSKARRWLG  120
TFDTAEQAAC AYDVAARVFR GAKARTNFPV EASAAAGYLP WGSEPPPPPQ NAAAYPLNTI  180
LLHNLLMSSS PHGCLLLHHA GHGHAHAHAH ANAHPPGQPD PTAPAPPPPP PVASSASTIT  240
TTASAPQDDD DDDDAWDCFL GRDAPETGLL QDVVQSAFRG NQGPRERGHA VRGALPVLPR  300
QQEVRREVFG GEDEGEFTML PQGLLQDMIQ CPAFLQQVAA APAAMGRRRR G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1982157480Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g47610.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317233.11e-158ethylene-responsive transcription factor ESR2
TrEMBLA0A0Q3FKI90.0A0A0Q3FKI9_BRADI; Uncharacterized protein
STRINGBRADI3G47610.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.12e-31ERF family protein