PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g47021.1.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 531aa MW: 60189.5 Da PI: 8.7162

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g47021.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40.7	7.9e-13	139	220	5	83
FAR1 5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 eYAk+vGFs++ +s+ks ++e k+ fvC+k+ +++++ k+ +k+++++ ++rt+Ck +l+vk+++ + + ++k++l Bradi3g47021.1.p 139 EYAKHVGFSIKCITSRKSALDNEKDKYLFVCNKNDRNNKKIKEapLVKKKTRSRTKRTDCKVRLRVKRMEaHTHELIKKFSL 220 7**********************************999999888899999999************9888888888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.2E-10	139	213	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
MDLNLPPEGF DEEEGEVWMH ANQVTMAGTC TAQPSEPIMH EVQFNMKGYA TATATDNAQP 60 SGPILHEVEL NMKAVATAQP SDASLHEVEK NIATAATAHP SGPSLDADGP SHRSNNTISM 120 PETNSWKTNS SNEPSSDDEY AKHVGFSIKC ITSRKSALDN EKDKYLFVCN KNDRNNKKIK 180 EAPLVKKKTR SRTKRTDCKV RLRVKRMEAH THELIKKFSL KKFLRSHGNI SKEERDFIKL 240 LHGVNLSSGK IMHFMSEIYG SRKNVPYNTK DVSNLKATFN ELEHVGDMGQ LLNHFDEMKK 300 EDPAFFYKLN LDHHHRVEKC FVPAYFKDHF FPFLQTTARI EGFNVVLKKY VNPHNSIFQF 360 FLQYKKLQES IEVAEDEQEF EGEDKILRPW SDYPMEEQAL AVYTRPIYLD GMLCCHVYNV 420 LTNMGLTDEI PGKLSRKDMR LIRYGNLCQG FTKIAANAST SDKITAIAKK HMATMELDVN 480 AARKAAATAS KKKKETQNSA PTINQFLTLR RMTGCNTVKV QHPTHVVLQN *

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

MDLNLPPEGF DEEEGEVWMH ANQVTMAGTC TAQPSEPIMH EVQFNMKGYA TATATDNAQP  60
SGPILHEVEL NMKAVATAQP SDASLHEVEK NIATAATAHP SGPSLDADGP SHRSNNTISM  120
PETNSWKTNS SNEPSSDDEY AKHVGFSIKC ITSRKSALDN EKDKYLFVCN KNDRNNKKIK  180
EAPLVKKKTR SRTKRTDCKV RLRVKRMEAH THELIKKFSL KKFLRSHGNI SKEERDFIKL  240
LHGVNLSSGK IMHFMSEIYG SRKNVPYNTK DVSNLKATFN ELEHVGDMGQ LLNHFDEMKK  300
EDPAFFYKLN LDHHHRVEKC FVPAYFKDHF FPFLQTTARI EGFNVVLKKY VNPHNSIFQF  360
FLQYKKLQES IEVAEDEQEF EGEDKILRPW SDYPMEEQAL AVYTRPIYLD GMLCCHVYNV  420
LTNMGLTDEI PGKLSRKDMR LIRYGNLCQG FTKIAANAST SDKITAIAKK HMATMELDVN  480
AARKAAATAS KKKKETQNSA PTINQFLTLR RMTGCNTVKV QHPTHVVLQN *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	194	RSRTKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g47021.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010239146.1	1e-138	uncharacterized protein LOC100843387
TrEMBL	A0A2K2D3Q9	0.0	A0A2K2D3Q9_BRADI; Uncharacterized protein
STRING	OPUNC11G08800.1	4e-84	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7287	5	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-11	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Bradi3g47021.1.p