PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g46570.2.p
Common NameBRADI_3g46570, LOC104583788
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 384aa    MW: 40621.6 Da    PI: 6.9659
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g46570.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.46.5e-07169190223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        C +Cgk F+r  nL+ H+r H
  Bradi3g46570.2.p 169 FCDICGKGFRRDANLRMHMRAH 190
                       6*******************99 PP
2zf-C2H212.20.00054254278123
                       EEETTTT..EEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCg..ksFsrksnLkrHirtH 23 
                       y C+ Cg  k+F    +L++H+r +
  Bradi3g46570.2.p 254 YACERCGgkKRFAVLTDLRSHLRHC 278
                       89********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.59E-6165190No hitNo description
PROSITE profilePS5015711.614168190IPR007087Zinc finger, C2H2
SMARTSM003550.0019168190IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280170190IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-6170190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355180216249IPR015880Zinc finger, C2H2-like
SMARTSM0035516254277IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEGSTTNQFA GAAARVGASS ANAAPLSAMP RGELADALIG VGVGGGDGDP RAALQRLAAL  60
GDRMAAVRHR LAASISGESQ PLSSSDIQSV SSEISSAAHL VVLNAANLLS SSLPFLAPPP  120
PPAAPAPVQE LPAAASSAEE LPREATKGDG GYDVVELDAE ELLAEHVHFC DICGKGFRRD  180
ANLRMHMRAH GDRFKTLDAL SRPGQAKPAA GGDVRFSCPF AGCNRNRAHR RFRPLKSAVC  240
TRNHFRRSHC PKLYACERCG GKKRFAVLTD LRSHLRHCGE EAQWRCSCGT TFSRKDKLFG  300
HLALFEGQGH MPAISAPNKD VVTVSTEASL DIIEEGGLEE NCGRENGDEG SFDPEFFKEW  360
VDELRDGAGP VGGTNWPGPA ARP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g46570.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235579.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1
RefseqXP_024318114.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLI1IAT20.0I1IAT2_BRADI; Uncharacterized protein
STRINGBRADI3G46570.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125503236
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.31e-58C2H2 family protein