PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi3g46320.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 260aa MW: 29058.7 Da PI: 9.5481 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.7 | 4.1e-18 | 80 | 134 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Le+ F+++++++ e++ LA++l+L rqV vWFqNrRa+ k Bradi3g46320.6.p 80 RKKLRLSKEQSASLEDSFKEHSTLTLEQKSNLANRLSLRPRQVEVWFQNRRARTK 134 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 120.3 | 9.9e-39 | 80 | 167 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rlskeq+++LE+sF+e+++L+ e+K++la++L l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL++ev+eLr Bradi3g46320.6.p 80 RKKLRLSKEQSASLEDSFKEHSTLTLEQKSNLANRLSLRPRQVEVWFQNRRARTKMKQTEVDCEYLKRCCETLTRENRRLQREVAELR 167 69************************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-17 | 65 | 137 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.8E-17 | 71 | 137 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.313 | 76 | 136 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-12 | 78 | 140 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.3E-15 | 80 | 134 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.11E-15 | 80 | 134 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 111 | 134 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 7.8E-21 | 136 | 181 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 7.0E-11 | 136 | 167 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence Send to blast |
MAHLTRVERT LVFLVVVRRS GSADSEVCRR GLDVNTVPVD DGASTPQSLL PSSMEVEVAV 60 RQAVDQEASE DEDNGGGRVR KKLRLSKEQS ASLEDSFKEH STLTLEQKSN LANRLSLRPR 120 QVEVWFQNRR ARTKMKQTEV DCEYLKRCCE TLTRENRRLQ REVAELRTFR PTPTYPFYHH 180 HHHLSGVSTA LPACHSCDNN NKATIYYAPP VVATPASITT VSSPGQRSPP SSTASSLFAR 240 PHFAPFTIHP VLRRQPSAS* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 77 | 83 | RVRKKLR |
2 | 128 | 136 | RRARTKMKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi3g46320.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014755648.1 | 1e-176 | homeobox-leucine zipper protein HOX7 | ||||
Refseq | XP_024318098.1 | 1e-176 | homeobox-leucine zipper protein HOX7 | ||||
Swissprot | Q0E0A6 | 1e-89 | HOX7_ORYSJ; Homeobox-leucine zipper protein HOX7 | ||||
TrEMBL | A0A2K2D3K4 | 0.0 | A0A2K2D3K4_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G46320.1 | 1e-177 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06710.1 | 5e-53 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi3g46320.6.p |
Publications ? help Back to Top | |||
---|---|---|---|
|