PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g45880.2.p
Common NameBRADI_3g45880
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 678aa    MW: 75490.9 Da    PI: 6.397
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g45880.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.11.2e-21127227198
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++ +++aee+       ++++ +  +l+ +d++ ++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F +  
  Bradi3g45880.2.p 127 FCKTLTASDTSTHGGFSVLRRHAEEClppldmtQNPPWQ--ELVAKDLHANEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFLR-- 215
                       99****************************986555545..8************************************************3.. PP

                       SSEE..EEEEE- CS
                B3  87 rsefelvvkvfr 98 
                        +++ l+v+v+r
  Bradi3g45880.2.p 216 GDNGDLRVGVRR 227
                       377778999997 PP
2Auxin_resp110.71.4e-36253335183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       a+ha+st++ F+v+Y+Pr+s+seFvv+v+k+++a ++k+svGmRfkm+fe+++++err+sGt++gv  + ++ W +S WrsLk
  Bradi3g45880.2.p 253 ASHAISTGTLFSVFYKPRTSRSEFVVSVNKYLEAKNNKMSVGMRFKMRFEGDEAPERRFSGTIIGVGSMTTSPWADSDWRSLK 335
                       789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.03E-44116256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-39123242IPR015300DNA-binding pseudobarrel domain
CDDcd100175.04E-20125227No hitNo description
PfamPF023621.7E-19127227IPR003340B3 DNA binding domain
PROSITE profilePS5086310.701127229IPR003340B3 DNA binding domain
SMARTSM010191.9E-20127229IPR003340B3 DNA binding domain
PfamPF065071.5E-34253335IPR010525Auxin response factor
PfamPF023092.8E-6536582IPR033389AUX/IAA domain
PROSITE profilePS5174524.701546628IPR000270PB1 domain
SuperFamilySSF542772.11E-12548623No hitNo description
PfamPF023092.7E-7593637IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MNPVRRLPDA RQPHQGSSSD ALYRELWHAC AGPLVTVPRQ GERVYYFPQG HMEQLEASTD  60
QQLDQHLPLF NLPSKILCKV VNVELRAETD SDEVYAQIML QPETDQSEPS SADPEPHEPE  120
KCNAHSFCKT LTASDTSTHG GFSVLRRHAE ECLPPLDMTQ NPPWQELVAK DLHANEWHFR  180
HIFRGQPRRH LLTTGWSVFV SSKRLVAGDA FIFLRGDNGD LRVGVRRLMR QLNNMPSSVI  240
SSHSMHLGVL ATASHAISTG TLFSVFYKPR TSRSEFVVSV NKYLEAKNNK MSVGMRFKMR  300
FEGDEAPERR FSGTIIGVGS MTTSPWADSD WRSLKVQWDE PSAIPRPDRV SPWELEPLVA  360
TSIQPPQPPA RNKRARPPAS PSIAPEHPPV FGLWKSPGES AQTFSFSGLQ RTQELYPSSP  420
NSIFSSSLNI GFKTKNEPST LPNNQFYWPI RDTRADSYSA SIDKVPASRK QEPTTAGCRL  480
FGIEIGSAVE ATSPVVDVSG ACHEQPAASV DIESDQLSQP SHVNKSDAPA ASSDRSPYET  540
QSRQVRSCTK VIMEGMAVGR AVDLTRLHGY EDLHQKLEEM FDIQGELSAS LKKWKLVYTD  600
DEDDMMLVGD DPWSEFCSMV KKVYIYSYEE AKHLTPKAKL PVVVDAIKPS PSKPPLEPDM  660
PQGGMGNNAQ VTDNNDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.01636213359Auxin response factor 1
4ldw_A0.01636213359Auxin response factor 1
4ldw_B0.01636213359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g45880.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235548.10.0auxin response factor 7
SwissprotQ6YVY00.0ARFG_ORYSJ; Auxin response factor 7
TrEMBLA0A0Q3FJT50.0A0A0Q3FJT5_BRADI; Auxin response factor
STRINGBRADI3G45880.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Representative plantOGRP5501582
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]