PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g45470.1.p
Common NameBRADI_3g45470
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 696aa    MW: 79032.1 Da    PI: 6.9392
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g45470.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.86.6e-2274160290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        Y++Y++++GFs+rk k+++ + +++i ++++ Cskeg +e ek +  +++ + ++trt+C+a+++ + +++g+w+v++l+++HnH+la
  Bradi3g45470.1.p  74 LYCDYGHRTGFSIRKGKQSYFTGTKRIRTKDYFCSKEGLKEGEKLT--DANFNDPHTRTNCRAMVRFRVNDHGEWKVIRLVSDHNHNLA 160
                       7****************************************99988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-1974160IPR004330FAR1 DNA binding domain
PfamPF105514.2E-28283377IPR018289MULE transposase domain
PROSITE profilePS509669.73566602IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-4568599IPR007527Zinc finger, SWIM-type
SMARTSM005750.0014577604IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MAAGVDHCEG AEPQDDGIGG DGTREGISNG NEMGRRGYGD EAENEEAATV QGSKEGTEEL  60
LRKVVYSEEE AYKLYCDYGH RTGFSIRKGK QSYFTGTKRI RTKDYFCSKE GLKEGEKLTD  120
ANFNDPHTRT NCRAMVRFRV NDHGEWKVIR LVSDHNHNLA SPEERHLLRS ARSLIAGRSS  180
SVDAVLYGGY QVAGAPSQMA VSTSVTNNPE SSKQDLPHSY NGIPKSPAAG TGDLQGLVNH  240
LKNRANEDGM FYWDVQIDRG GRMTNFFWRD GRSRIDYDCF GDVVVFDSTY RLNRQNLICA  300
PFVGVNHHWQ TAIYGCALLA DESLSSFVWL FKSFLEAMGN RHPRSIFTNQ DQVMSKAIEE  360
VFPSTCHRIA HWHIQKNAAS RLGALNGSKA FNKMFKKCMQ GCDSEAEFEE TWAEMLREFK  420
LQDNKWLNKL YKLKQKWSSA FNKCTFDGGV ENEPQCDSLS NIFSCIADKL TSLSAIIVAV  480
DKLTEDWREK ELDEDTRCCQ KPPACIIKHS DILNHAAKLY THRIYKLFET YFLDGCGATK  540
FKELRCEDGN TYRFEMTMQG RGSRVCTVHL NLSTMQLTCS CSKFETMGLL CPHALKALSI  600
KNVCKIPETY ILKRWTKDAK QWVFNPKLYE SSYQECMDSE AAYCSHVMRY AYDLVMKSQG  660
QEELRKSLWE TLESGEKELE KYLENVAQYA LSYAT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g45470.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647361.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
RefseqXP_015689296.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
TrEMBLA0A0Q3FKQ60.0A0A0Q3FKQ6_BRADI; Uncharacterized protein
STRINGBRADI3G45470.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1457144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-91FAR1-related sequence 5