PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g45450.1.p
Common NameBRADI_3g45450
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 775aa    MW: 81390.5 Da    PI: 10.0745
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g45450.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.3e-09203247244
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                       ++W++eEd  l  +v++ G g+W  I ++ +  ++Rt+ q+  rw
  Bradi3g45450.1.p 203 KPWSKEEDADLTTGVQKCGEGNWLDILHKYNfdNTRTPVQLSQRW 247
                       68******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.6E-12196254IPR009057Homeodomain-like
PROSITE profilePS5129410.913197256IPR017930Myb domain
SMARTSM007171.2E-8201253IPR001005SANT/Myb domain
PfamPF002492.3E-7203247IPR001005SANT/Myb domain
SuperFamilySSF466892.62E-13204261IPR009057Homeodomain-like
CDDcd116601.30E-17205252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000784Cellular Componentnuclear chromosome, telomeric region
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MAAALPATGR GKRKRDFSED DVFLILYKYA PATILTALQE VAQHTKGRKI DWRALVAKTT  60
TGITSAREYQ MLWRHFAYGH EFVENVDDSA QPLGDDSDLE CEIEPVPTPR NEDIAEASGF  120
AKLLLYGSSR EQASSHRVNS EVPVQNTPKE KIPRVPSDKQ LNQSHRLTNG TGPVSNLKQT  180
SQTGLSLDPF DGNGPHKKKK KPKPWSKEED ADLTTGVQKC GEGNWLDILH KYNFDNTRTP  240
VQLSQRWALI CKRQGITKPA NAKPVTGNLD KEAAQKAFSL AIGMPIARKA GSSTSRSGAS  300
QQSSQHPLPV FGTTIPELKP ATASSSLPVS VPGPVTLPVP VHVQQPLPQI LQVSAQAPPL  360
KVSNTSSKSR NNKKQGAQQN PVSAPSSIQA AAIAAGGRIA TQSDATNFLK VARSTKAVHI  420
RSQGTGSAKI STGSKASTVA GEPGTQLGSA QHPEPPNSSA PTPSPPVLTT HATEQVNVVS  480
ELTVVNHPEQ SAGAHLLETN STLNTMPLSG PCDNVEMDDD STFCVVTMED LFPEDVKQPD  540
IVDLKAEEII DPKDADMLEF DRFVAQGCLN MDYVDKSKNV KIAPEAQGGA GSQKRQLKQL  600
SAVGKSIPVF SRAAATGKKT KTLGPNVATF PATGTSSGLI GTGNAGVLSK AVWGKTAGLG  660
TTGKQNRCQE IMAQKQHTTN SKGNGVPKNA VLSTGTAAKN MAPTTGTPAR NVAPGTTGTP  720
ARNVALVTGT PARNSALGTG TSVRNVSPGS GTPANRHASP AANGSSKGNP PAAQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g45450.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572605.10.0uncharacterized protein LOC100823787
TrEMBLI1IAE30.0I1IAE3_BRADI; Uncharacterized protein
STRINGBRADI3G45450.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Representative plantOGRP59231520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.11e-45MYB_related family protein