PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g45370.2.p
Common NameBRADI_3g45370
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 249aa    MW: 26594.3 Da    PI: 8.0651
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g45370.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.27.9e-1058108155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       rr+ h + E  RR+++ + f++L+ llP++   p    +K +i  ++++YIk L+
  Bradi3g45370.2.p  58 RRALHAATEHERRRQMSELFNNLQGLLPSL---P-DETDKLMIMMEVIQYIKTLE 108
                       7999*************************7...3.789**************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-1356125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.11657107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-758108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-1258120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.83E-758112No hitNo description
SMARTSM003536.1E-563113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSSGSGSGSK GSDLTGAGIV DKGKGIVKEE EQEEGGGSKG KMMSIVQRAD ATAGGSCRRA  60
LHAATEHERR RQMSELFNNL QGLLPSLPDE TDKLMIMMEV IQYIKTLEGT LSELEKRKQD  120
RMQGISSSSS AARATVMAHQ QPVGGIFQAW AAAVAPVGAA VPAVPMELQK WLGQNVVLSL  180
SGDDAYINVC SARRAGLLTM VVAILEKYSI EVVTSEIASD SSRNRFTFLT RRACRGAFNS  240
FQLPQDIL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g45370.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572599.11e-124transcription factor bHLH95
RefseqXP_010235515.11e-124transcription factor bHLH95
RefseqXP_010235516.11e-124transcription factor bHLH95
RefseqXP_010235517.11e-124transcription factor bHLH95
RefseqXP_024317803.11e-125transcription factor bHLH95
TrEMBLA0A0Q3FJJ80.0A0A0Q3FJJ8_BRADI; Uncharacterized protein
STRINGBRADI3G45370.11e-168(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.17e-20bHLH family protein