PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g44520.1.p
Common NameBRADI_3g44520, LOC100836164
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 493aa    MW: 54159.4 Da    PI: 7.3231
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g44520.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-056991123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y C+ C+k F r  nL+ H r H
  Bradi3g44520.1.p 69 YICEVCHKGFQRDQNLQLHRRGH 91
                      89*******************88 PP
2zf-C2H210.90.0014145167123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC  C+k +  +s+ k H + +
  Bradi3g44520.1.p 145 WKCDRCSKKYAVQSDWKAHTKIC 167
                       58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.5E-56891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.07E-66891No hitNo description
SMARTSM003550.0386991IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7416991IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM0035559110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.3E-4133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.07E-6140165No hitNo description
SMARTSM00355230145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MSSHTSEEES LNNFQQQPKL EAGAAGPSRG DVGVAMPAVK KRRGHPGNPD PDVEVVALSP  60
KTLVATNRYI CEVCHKGFQR DQNLQLHRRG HNLPWKLKQR SSTDAKKKVY VCPEVTCPHH  120
DASRALGDLT GIKKHFSRKH GEKKWKCDRC SKKYAVQSDW KAHTKICGTK EYRCDCGTIF  180
SRKDSFITHR AFCDALAEDN SRVNHSLATM VGSLHGQQDM FSHGVPNLSS SPTDMVANMS  240
SNDHNSDMHL RSLSPYALIT RNTALFSNQM SSKDTGFPLD GSASSYSYMS MNSPYMSATA  300
LLQKAAEMGA KTSQDPISPL LLKGFPNNFS SARDHMDISS GSQGDSLGNS AANSVCMKTA  360
EDDSSYMNGR SNILINSAWT TGMMTPTTVP LIGLMNQPFS MRQEKESPHI FPEIQTQHDR  420
QENISAVGDA GLTQDFLGLG GSGNLDMSSE TYNTDVTALS YSDEQQKTQE HIYSYHQSSL  480
DSNALEKPLW DA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-33141204366Zinc finger protein JACKDAW
5b3h_F5e-33141204366Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g44520.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572569.10.0protein indeterminate-domain 12
TrEMBLI1IA330.0I1IA33_BRADI; Uncharacterized protein
STRINGBRADI3G44520.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114253240
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-107indeterminate(ID)-domain 2