PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g44470.1.p | ||||||||
Common Name | BRADI_3g44470, LOC100834930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 249aa MW: 26567.7 Da PI: 4.8989 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.6e-19 | 38 | 88 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y GVr+++ +gr++AeIrdp + + r++lg+f+taeeAa a+++a+++++g Bradi3g44470.1.p 38 PRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAIAYDRAARAIRG 88 6899******.**********843...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.86E-30 | 38 | 96 | No hit | No description |
Pfam | PF00847 | 2.3E-11 | 38 | 88 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-21 | 39 | 96 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-29 | 39 | 96 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.338 | 39 | 96 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-33 | 39 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-8 | 40 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-8 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MNFSFFSSSS SSSGKKSSAS KQRRQQQPPE ESGNNTTPRY LGVRRRPWGR YAAEIRDPAT 60 KERHWLGTFD TAEEAAIAYD RAARAIRGAS ARTNFAFPDL PPGSSVTPYL SPDIPADQLQ 120 QHHFYGGNAD VPALPLPAPS GYQIQGAAGD VHGHHLGNNN ESSYHMPAAM SYGGSGNANA 180 EVDMYAGGGG DGTWCEASEL DLGGSYDESN GVYFEDGYVH SPMFSPMPAA DEAVDAFQLG 240 GSSSSYYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-17 | 39 | 95 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g44470.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 4e-82 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003572568.1 | 0.0 | ethylene-responsive transcription factor LEP | ||||
TrEMBL | I1IA28 | 0.0 | I1IA28_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G44470.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1885 | 33 | 97 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 8e-24 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g44470.1.p |
Entrez Gene | 100834930 |