PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g44370.5.p | ||||||||
Common Name | BRADI_3g44370, LOC100833407 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | Trihelix | ||||||||
Protein Properties | Length: 365aa MW: 39251.1 Da PI: 4.7904 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 79.5 | 4.8e-25 | 27 | 126 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 rWt+qe+l+Lie++r +e r + + + +p+W++v++++r++g+er+p+qC+++w+nl+++ykkike+e+ ++ + Bradi3g44370.5.p 27 RWTRQEILVLIEGKRMVEVRGGGRGgrgrvaaaaaaaageaaaALEPKWAAVAEYCRRHGVERGPVQCRKRWSNLAGDYKKIKEWERAAAAAR 119 8**************887777632223446666677777777688******************************************974433 PP trihelix 76 sstcpyfdql 85 p f + Bradi3g44370.5.p 120 ---EPSFWAM 126 ...4777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-5 | 27 | 101 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.214 | 27 | 102 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 5.8E-10 | 27 | 125 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050777 | Biological Process | negative regulation of immune response | ||||
GO:0071219 | Biological Process | cellular response to molecule of bacterial origin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MSNAGDPAGA AAAAAATPSG RAPRLPRWTR QEILVLIEGK RMVEVRGGGR GGRGRVAAAA 60 AAAAGEAAAA LEPKWAAVAE YCRRHGVERG PVQCRKRWSN LAGDYKKIKE WERAAAAARE 120 PSFWAMRNDA RRERRLPGFF DREVYDILEG RGRGIVAGTS GGNAAGEEET AVRVDEEEEE 180 EEEEKGKEKE VGVAEEPVFD SGRAAGDDTL FSEDEEGELE ETPATTQASP PAVVALPISE 240 KSEASRQQST EQAGTSSKDK QPRQQGQGAE RGASPTQQQQ QQQSGQKRQR TGDGDSEAGE 300 EGTAGLQGKL LEILDRNNRM VAAQLEAQNV NWERDREQRR DQADSLAVVL GRLADALGRI 360 ADKL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00288 | DAP | Transfer from AT2G33550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g44370.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235470.1 | 0.0 | trihelix transcription factor ASR3 isoform X1 | ||||
TrEMBL | I1IA15 | 0.0 | I1IA15_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G44370.5 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3915 | 26 | 48 | Representative plant | OGRP1747 | 13 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 2e-52 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g44370.5.p |
Entrez Gene | 100833407 |