PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g44143.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 200aa MW: 21307.6 Da PI: 7.1468 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.2 | 5e-15 | 91 | 135 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++ E++l++++++++G+g Wk+ ar++ +R++ q+ s++qky Bradi3g44143.1.p 91 PWSEVEHKLFLEGIRKHGTGGWKRLAREFVVTRSAGQIASHYQKY 135 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.87 | 84 | 140 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.52E-12 | 85 | 141 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-11 | 87 | 138 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.3E-9 | 88 | 138 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-13 | 91 | 135 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.33E-10 | 91 | 135 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.0E-10 | 91 | 135 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MVAELRRVLQ APQVETPPGW DLQEIAPTLA AGGEAGVTVG DDVGAPPPAD GEAASIPATD 60 CVASKEAVNQ KTTGKNQKKK AVPQKRNKAV PWSEVEHKLF LEGIRKHGTG GWKRLAREFV 120 VTRSAGQIAS HYQKYSIRQA KRRRNECKRP SIHDIDHDGT TGAAADHGSN QQPVAADGEP 180 ESGTTDDVSA GEEEAANYR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g44143.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010236797.1 | 1e-143 | transcription factor MYBS1 | ||||
TrEMBL | A0A2K2D310 | 1e-144 | A0A2K2D310_BRADI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14418 | 18 | 25 | Representative plant | OGRP17847 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 9e-22 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g44143.1.p |