PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g43900.4.p | ||||||||
Common Name | BRADI_3g43900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 339aa MW: 38316.6 Da PI: 8.3759 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00067 | 44 | 67 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt..H 23 C dCgk+++++ + H ++ H Bradi3g43900.4.p 44 ICADCGKPCRSQTEVDLHTKRtgH 67 6***************99998666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 8 | 30 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 45 | 67 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF46934 | 3.13E-17 | 102 | 165 | IPR009060 | UBA-like |
Gene3D | G3DSA:1.10.8.10 | 3.3E-11 | 103 | 157 | No hit | No description |
CDD | cd14290 | 2.24E-20 | 111 | 159 | No hit | No description |
PROSITE profile | PS50030 | 11.125 | 111 | 152 | IPR015940 | Ubiquitin-associated domain |
SMART | SM00165 | 6.6E-4 | 113 | 151 | IPR015940 | Ubiquitin-associated domain |
Pfam | PF00627 | 1.2E-6 | 113 | 149 | IPR015940 | Ubiquitin-associated domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MAGLSLRCGD CGVQLRSVEE AQAHAEATSH TNFAESTEAV LNLICADCGK PCRSQTEVDL 60 HTKRTGHAEF TDKTMEAAKP IDLEAPLKPA AEAMDVDASG SGEPQEMVAP EVNKEMLADL 120 EAMGFSTARA TRALHFSGNS TIEGAINWLS EHQDDPDIDE MPMVPANTNT DANKPSLTPE 180 EKKIKAQELR ERARKKKEEE ERRTEREKEK ERIRIGKELL EAKRMEEANE RKRMIELRRL 240 EKEEEKRARE KIRQKLEEDK AERRRKLGLP AEDPAASKPS PPPPVEEKKS ALPVRPATKA 300 DRMRDCLRNI KQQNKVSLPS LRKKTNMKSW IQKRRMLK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g43900.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP094262 | 0.0 | FP094262.1 Phyllostachys edulis cDNA clone: bphylf035k19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024317884.1 | 0.0 | UBX domain-containing protein 1 isoform X2 | ||||
TrEMBL | A0A0Q3QCQ6 | 0.0 | A0A0Q3QCQ6_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G43900.1 | 0.0 | (Brachypodium distachyon) |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g43900.4.p |