PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g42633.1.p | ||||||||
Common Name | BRADI_3g42633, LOC104584262 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 188aa MW: 19209.4 Da PI: 9.6325 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00017 | 54 | 76 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C ++F ++ L H++ H Bradi3g42633.1.p 54 FSCTYCRRRFYSSQALGGHQNAH 76 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.96E-6 | 50 | 81 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.8E-4 | 50 | 79 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.032 | 54 | 81 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 56 | 76 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MERAAPGGEV NLDLRLLHHS TVAAAAAARR QHVTPMPMPV PAGGVSEGGG DRSFSCTYCR 60 RRFYSSQALG GHQNAHKLER SLAKRSRDLS SAVAGIAGAA SSSSSPPSPA DLMIIGSSSW 120 YPPPRGSGSG DHHVVVDQAA AGSPSAAAAA AVVSWIADGA GRRRHSGYHT RVHAGAEDDG 180 IDLSLKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g42633.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003928 | 2e-52 | AP003928.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1150_A11. | |||
GenBank | AP005480 | 2e-52 | AP005480.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0439B07. | |||
GenBank | AP014964 | 2e-52 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 2e-52 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010236785.1 | 1e-130 | zinc finger protein GIS3 | ||||
TrEMBL | A0A0Q3FM90 | 1e-129 | A0A0Q3FM90_BRADI; Uncharacterized protein | ||||
STRING | ONIVA08G26310.1 | 9e-34 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 | Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57520.1 | 3e-17 | zinc finger protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g42633.1.p |
Entrez Gene | 104584262 |